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update sourmash compare -h docs too
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ctb committed Dec 13, 2022
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7 changes: 4 additions & 3 deletions src/sourmash/cli/compare.py
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The default output is a text display of a similarity matrix where each
entry `[i, j]` contains the estimated Jaccard index between input
signature `i` and input signature `j`. The output matrix can be saved
to a file with `--output` and used with the `sourmash plot` subcommand
(or loaded with `numpy.load(...)`. Using `--csv` will output a CSV
file that can be loaded into other languages than Python, such as R.
to a file with `--output <outfile.mat>` and used with the `sourmash
plot` subcommand (or loaded with `numpy.load(...)`. Using `--csv
<outfile.csv>` will output a CSV file that can be loaded into other
languages than Python, such as R.
Command line usage:
```
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