Changelog

v2.30.0 (2025-01-24)

EDPDEV-1535 add commit download support (#474)
Fix issue with upload_file where the nested client was not used (#475)
Fix failing test around empty metadata (#476)

v2.29.2 (2024-10-14)

Fix issue occurring on "import solvebio" (#471)

v2.29.1 (2024-08-12)

Fix issue occurring with empty credentials files (#464) (EDPDEV-1957)

v2.29.0 (2024-08-12)

Add automatic API host redirection from solvebio.com to quartz.bio (#465) (IM-1765)

v2.28.0 (2024-07-10)

Add additional retry mechanism for S3 uploads (#461) (EDPDEV-1175)
Revert: Don't verify SSL for internal connections (#454) (EDPDEV-1696)

v2.27.0 (2024-05-23)

Fix MemoryError when querying files (#453) (EDPDEV-1195)
Add Python 3.11 and 3.12 to test matrix (#455) (EDPDEV-1660)
Add Connect to Client Retry Configuration (#447) (EDPDEV-1175)
Switch API endpoint and datasets used for tests (#438) (EDPDEV-1117)
Don't verify SSL for internal connections (#454) (EDPDEV-1696)
Add --follow-shortcuts to ls command (#448)
Add helper script to upgrade templates to Python 3 (#451)
Fix issue with YAML loading in recipe sync helper (#456)

v2.26.0 (2023-12-01)

Add support for recursive uploads and downloads with shortcuts (EDPDEV-898)
Add support for parallel downloads (EDPDEV-938)

v2.25.0 (2023-10-25)

Add support for creating and retrieving shortcuts (EDPDEV-896)
Add support for new EDP connection environment variables (EDPDEV-1075)

v2.24.2 (2023-10-05)

Fixed another connection issue with parallel upload command that used the wrong global credentials (EDPDEV-1049)

v2.24.1 (2023-09-11)

Fixed connection issue with parallel upload command (EDPDEV-1000)

v2.24.0 (2023-08-22)

Add vault file versioning support
Add --recursive option to ls command

v2.23.0 (2023-07-05)

Add support for Python 3.10
Remove nosetests (replace with pytest)
Remove deprecated VCF parser code

v2.22.0 (2023-06-12)

Fix issue with Query.join() where join keys are not the same (#432)
Disable concurrent file uploads (#430)
Fix issue with download command involving vaults (#429)

v2.21.0 (2022-11-25)

Add parallel upload support upload CLI command (#422)
Add "archive" support to upload CLI command (#423)

v2.20.0 (2022-11-17)

Added recursive data download support in cli command (#418)
Added ls data cli command (#418)

v2.19.0 (2022-05-05)

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Merged pull requests:

add new global search params (vault_scope and entities_match) #414 (davecap)

v2.18.1 (2022-01-24)

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Merged pull requests:

Global Beacon interface update #411 (krivi95)

v2.18.0 (2022-01-14)

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Fixed bugs:

Bug in restore dataset functionality #407

Closed issues:

Add Global Beacon support #409
Possible improvement: update description/expression if field was updated via migration #360

Merged pull requests:

Add Global Search and Global Beacon support #410 (davecap)
fix default restore storage class issue and change to Standard-IA instead of Standard #408 (davecap)

v2.17.1 (2021-11-04)

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Merged pull requests:

make env variables consistent with solvebio-dash #406 (davecap)
remove dotenv from the streamlit lib #405 (davecap)

v2.17.0 (2021-11-01)

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Merged pull requests:

SolveBio OAuth2 wrapper for Streamlit apps #404 (krivi95)

v2.16.0 (2021-03-03)

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Implemented enhancements:

File querying shows "999999999999999 more results" when the total is unknown #392

Closed issues:

Join query limited to 99 records #393
Add logic for filtering file-based queries. #383

Merged pull requests:

Enable pagination for the join method #394 (nikolamaric)
Migrate from Travis to GitHub actions #390 (davecap)
Improve condition that checks page_size param #388 (nikolamaric)

v2.15.0 (2021-01-08)

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Closed issues:

Dataset/File query raises an error when it has been sliced and a stop param is set to float('inf') #385

Merged pull requests:

Handle parallel migrations #387 (davidhpark)
Handle a query slicing when the potential number of returned records in the query is larger than the number of records left in the dataset/file #386 (nikolamaric)
Enable using filters, fields, exclude_fields for a QueryFile object. #382 (nikolamaric)

v2.14.1 (2020-12-04)

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Closed issues:

Don't change data types to object in joins for list fields #380

Merged pull requests:

Flatten lists of lists instead of using "object" data type in joins #379 (davecap)

v2.14.0 (2020-12-01)

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Closed issues:

Test is creating a DatasetTemplate on every run #362

Merged pull requests:

Use a different fake dataset ID #378 (davecap)
Add support for archiving and restoring datasets #377 (jsh2134)
Update mock #376 (jsh2134)
Update Travis to Ubuntu 18.04 #375 (damnjanovictanja)
Update to newest HGNC #374 (damnjanovictanja)

v2.13.1 (2020-10-14)

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Merged pull requests:

Fix object serialize() for missing metadata attribute #372 (davecap)

v2.13.0 (2020-10-14)

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Implemented enhancements:

Add ability to query files and join datasets #363 (nikolamaric)

Fixed bugs:

Chaining join methods doesn't return an expected result #370
Failure to upload folders of files containing chinese chars #365
Modifying object attributes that are dictionaries may not save updates #276

Closed issues:

Metadata as class<str> after saving empty metadata #324

Merged pull requests:

add version and name to recipes script #368 (jsh2134)
Sync recipes command refactoring #367 (damnjanovictanja)
Add solvebio-recipes tool #364 (damnjanovictanja)
Issue 324 metadata is str after saving empty dict #356 (nikolamaric)
Issue 276 dict attributes not save updates #355 (nikolamaric)

v2.12.0 (2020-08-03)

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Fixed bugs:

solvebio login requires quoted arguments #179

Closed issues:

object.tag() clear existing tags in solvebio 2.11.0 #347
Error on updating fields in DatasetTemplate #344
Add param to disable email notifications on Dataset export #327

Merged pull requests:

Object tagging updates #353 (nikolamaric)
Add protocol resolving logic #348 (nikolamaric)
handle case where the error message contains a list of dicts #343 (jsh2134)

v2.11.0 (2020-05-05)

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Merged pull requests:

Add alpha query join (limited left outer join) feature #341 (davecap)
Ability to add target fields to queries #340 (davecap)
Add missing client pass-through for Dataset.get_or_create_by_full_path #339 (davecap)

v2.10.1 (2020-04-28)

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Fixed bugs:

solvebio whoami raises exception when no credentials are found #336

Merged pull requests:

Dataset.get_or_create_by_full_path should always return Dataset object #338 (jsh2134)
do not expect that error contains json #337 (jsh2134)

v2.10.0 (2020-04-24)

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Implemented enhancements:

Convert Dataset.create calls to Object.create to use newer endpoint #326
Show error message when requests fail with 403 #320
Give Object instances that represent "datasets" the ability to be queried #287
Shortcut to create a new file object in a SolveBio vault from an export #274
Command line import does not support validation/reader/etc.. params from templates #254
Add shortcut to use a DatasetTemplate for an import #245

Fixed bugs:

SolveBio command line shell --api-token argument does not work #318
Cannot log in with python-requests 2.12.4 #188

Closed issues:

Update SolveError to include more error messages #333
Request - Shortcuts for creating folders with descriptions (or bug where create_folder doesn't allow slashes?) #251

Merged pull requests:

Clean the netrc output format for the new "account" item #334 (davecap)
More travis builds #332 (jsh2134)
Object.get_or_create_by_full_path() #331 (jsh2134)
add command to print out the active Task queue #330 (jsh2134)
adds a shortcut to check if an object contains a tag #329 (jsh2134)
CLI to download multiple files #328 (jsh2134)
import command should respect template params #323 (jsh2134)
More login simplification #322 (jsh2134)
Updates to "create-dataset" and "import" shortcut commands #321 (jsh2134)
Access token improvements #319 (davecap)

v2.9.0 (2019-11-07)

Full Changelog

Implemented enhancements:

Helper shortcuts for navigating in a given folder #249

Closed issues:

[CLI] Add ability to the upload shortcut to create folders if they don't exist #241
[CLI] Make upload shortcut --full-path arg optional? #224

Merged pull requests:

Fix error message when IP whitelisted #316 (davidhpark)
Upload CLI changes, Tag CLI, vault object shortcuts #315 (jsh2134)
retry on more status codes, raise error when upload unsuccessful #314 (jsh2134)
Update tests reliant on deleted source data #313 (jsh2134)

v2.8.9 (2019-09-19)

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Merged pull requests:

Fix issue with activity pagination #311 (davecap)
add target_full_path kwarg to export shortcut #310 (jsh2134)

v2.8.8 (2019-09-12)

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Merged pull requests:

add is_shared column to saved query output #309 (jsh2134)
hotfix for login when no credentials found #308 (jsh2134)

v2.8.7 (2019-09-03)

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Fixed bugs:

Dash Auth defaults cookies as SameSite=Strict which blocks links to apps #303

Closed issues:

[Activity] Simplify and cleanup follow() function (allow sleep time to be configured) #285

Merged pull requests:

Task Activity improvements #306 (jsh2134)
Add ability for scripts to customize the user-agent #305 (davecap)

v2.8.6 (2019-07-03)

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Implemented enhancements:

Add support for dash v1.0+ #278

Merged pull requests:

Set cookie with SameSite=Lax to allow link-outs to Dash apps #304 (davecap)

v2.8.5 (2019-06-28)

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Merged pull requests:

Fix typo and pop salt before passing to SolveBioAuth #302 (davidhpark)

v2.8.4 (2019-03-25)

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Fixed bugs:

Installing from pypi breaks interactive shell (urllib.parse import) #299

Merged pull requests:

Use six.moves to eliminate 2to3 issues (closes #299) #300 (davecap)

v2.8.3 (2019-03-22)

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Fixed bugs:

[DashAuth] Specify cookie max_age to prevent immediate expiry #296

Merged pull requests:

Prevent cookie from expiring immediately #298 (davidhpark)

v2.8.2 (2019-03-07)

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Merged pull requests:

Revert change to Query.facets() #293 (davecap)

v2.8.1 (2019-03-05)

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Implemented enhancements:

Retry failed S3 uploads when the connection is reset by a proxy #291
[Dash] Add error handler in callback decorator #266

Fixed bugs:

Calling next on a new Query instance breaks it #286
Remove token from SolveClient repr #283
[Install] SolveBio install fails with pycurl error re: SSL backend #277

Merged pull requests:

Retry uploads up to 5 times #292 (davecap)
Handle case where Query iterator has not been initialized (closes #286) #288 (davecap)
Dont expose the token in __repr__ #284 (davecap)

v2.8.0 (2018-10-29)

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Implemented enhancements:

Remove deprecated exporters and pycurl dependency #281

Merged pull requests:

Remove deprecated/unused exporters and remove curl dependency #282 (davecap)

v2.7.0 (2018-09-11)

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Implemented enhancements:

Add data (context) to Annotator kwargs #271

Merged pull requests:

Update Task objects and add shortcut to cancel tasks #273 (jsh2134)
add annotator_params to annotate endpoint #272 (jsh2134)
add support for saving credentials with your api key #270 (davecap)

v2.6.1 (2018-07-10)

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Merged pull requests:

fix issue with ipython embed + args #269 (davecap)

v2.6.0 (2018-07-10)

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Fixed bugs:

[Dash] scripts.config.serve_locally is set to True by default when it should be False #263
[Vaults] create_folder ignores path kwarg #260
SolveBio shell does not see globals when defining functions #257
SolveBio CLI: solvebio -> login -> shell does not properly retain credentials #255
Iterating through a list of objects retrieved is... strange #250

Merged pull requests:

Add Group resource #267 (jsh2134)
Add saved queries #265 (davidhpark)
Keep Dash scripts.config.serve_locally False #264 (davidhpark)
fix issue where API resource iterators are not reset #262 (davecap)
Fix create_folder shortcut #261 (jsh2134)
Fix two issues with IPython shell #258 (davecap)

v2.5.1 (2018-05-25)

Full Changelog

Implemented enhancements:

[DashAuth] Upgrade SolvBioDash and SolveBioAuth to use latest dash-auth #252

Merged pull requests:

Add support for latest dash-auth #253 (davecap)

v2.5.0 (2018-04-25)

Full Changelog

Implemented enhancements:

Ability to load filters from JSON and/or a dict #246

Merged pull requests:

add support for loading json filters #248 (davecap)

v2.4.6 (2018-02-23)

Full Changelog

Closed issues:

Unable to upload to cross-account Vault #238
Problem logging in using Python 3.6 #235

Merged pull requests:

pass vault object through instead of vault name #239 (jsh2134)
printing incorrect url #237 (jsh2134)
removed six import, changed input to raw_input #236 (davidhpark)

v2.4.5 (2018-02-13)

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Merged pull requests:

fix client-passthrough for object validation #234 (davecap)

v2.4.4 (2018-02-12)

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Fixed bugs:

Fix error message shown in "validate_full_path" when not authenticated #232

Merged pull requests:

fix error message and client pass-through for object path validation #233 (davecap)

v2.4.3 (2018-02-08)

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Closed issues:

Confusing error on dataset creation if there is a folder with the same name in that folder path #229

Merged pull requests:

include additional oauth error response content in the view #231 (davecap)
include optional object type assertion when getting objects #230 (davecap)

v2.4.2 (2018-02-01)

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Implemented enhancements:

[Manifest] Add reader_params to add_url #214

Merged pull requests:

Fix issue where files were not uploaded in binary mode #228 (davecap)
allow login(api_host=XYZ) #225 (davecap)
add reader_params #216 (jsh2134)

v2.4.1 (2018-01-16)

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Fixed bugs:

"Jobs" URL shown when importing a file is incorrect #183

Closed issues:

[Export] Filenames contain AWS file parameters #208
[Upload] Shortcut fails when folder name contains space? #201
Python fix-ups #182

Merged pull requests:

better error if invalid path #223 (jsh2134)
shortcuts properly handle ~ autoexpand #222 (jsh2134)
minor fixes #221 (jsh2134)
fix filename issue for downloadable resource #220 (davecap)
validate the object's full path before getting it by full path #219 (davecap)

v2.4.0 (2018-01-11)

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Merged pull requests:

try refactoring path validators with regex #218 (davecap)
update import and create-dataset shortcuts to require full path #217 (jsh2134)
remove invalid tabulate fields for Application resource #215 (davecap)

v2.3.3 (2017-12-13)

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Fixed bugs:

Unable to download Vault Objects #212
Dash auth wrapper redirect URL is incorrect if different from provided app_url #210
File upload with version 2.1.0 on Windows 7 #189

Closed issues:

Deploy v2.3.2 to pypi #207

Merged pull requests:

add DownloadableAPIResource mixin to Object resource and add support for Object download response to the mixin #213 (davecap)
use the provided app_url instead of flask's url_root (fixes #210) #211 (davecap)
add required args to create_folder and create_dataset #209 (davecap)
use cross-platform /dev/null (closes #189) #190 (davecap)

v2.3.2 (2017-11-28)

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Closed issues:

Release Version 2.3.1 to pypi #205

Merged pull requests:

[Bug] method turned property bug #206 (jsh2134)

v2.3.1 (2017-11-22)

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Merged pull requests:

update retrieval of datasets by jobs/tasks #204 (jsh2134)
replace PRINTABLE_NAME with something dynamic #203 (davecap)

v2.3.0 (2017-11-09)

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Implemented enhancements:

Add support for entity filters in Query class #195

Merged pull requests:

add support for entities query param (closes #195) #202 (davecap)
add Application resource #200 (davecap)

v2.2.1 (2017-10-18)

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Fixed bugs:

Task resource does not use local SolveClient #197

Merged pull requests:

fix issue where task method did not pass client through #198 (davecap)

v2.2.0 (2017-10-05)

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Fixed bugs:

incorrect filter parameter #192 (jsh2134)

Merged pull requests:

update sample script #196 (jsh2134)
update manifest info #193 (jsh2134)
Support for isolated SolveClient (with non-global tokens) #191 (davecap)

v2.1.0 (2017-09-08)

Full Changelog

Closed issues:

Add beacon and beacon set support #184

Merged pull requests:

Use Object based uploads, deprecate Upload resource #186 (jsh2134)
add basic BeaconSet and Beacon resources #185 (davecap)

v2.0.1 (2017-08-23)

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Merged pull requests:

update filter creation to correctly handle nested dict filters #180 (jsh2134)

v2.0.0 (2017-07-28)

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Implemented enhancements:

When an export is complete, add a message to indicate that the user should download the file #164
Allow solvebio import shortcut to take an upload id #120
HTTP Caching support for data query requests #11

Fixed bugs:

Check for existence in depository.latest_version() #124

Closed issues:

Add "upload" command-line sub-command #149
Autocomplete on query filters (kwargs)? #4

Merged pull requests:

Hyrule Support for Python Client #172 (jhuttner)

v1.17.1 (2017-06-05)

Full Changelog

Implemented enhancements:

Add Unit Tests for client shortcuts #142

Fixed bugs:

Dataset export of a query requires a limit #167

Closed issues:

Add a "data migration preview" mode to test migrations ("dry-run") #161
Check compatibility with Travis Build environment updates #158

Merged pull requests:

use new travis distribution: Ubuntu 14 #171 (jsh2134)
Test case updates #170 (jsh2134)
handle max export limit case #169 (jsh2134)
move commit follow() into commit resource #168 (jsh2134)

v1.17.0 (2017-05-04)

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Closed issues:

Add support for Expressions and Annotations #146

Merged pull requests:

Add Annotator and Expression support #163 (davecap)
fix an issue where a manually set api_host was not used by client #162 (davecap)
mock create dataset test #160 (jsh2134)
fix the last message on DatasetMigration.follow() #159 (davecap)

v1.16.0 (2017-04-21)

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Implemented enhancements:

Clone/copy shortcut based on a query #145
Add exclude_fields support to Query #148
Add retries to the Upload resource #147
More robust follow() function #134

Fixed bugs:

Update DatasetImport follow() function to follow DatasetCommits as well #133

Closed issues:

Add support for Dataset Migrations #151
Add support for dataset exports #150

Merged pull requests:

update follow logic of imports now the commits are decoupled #157 (jsh2134)
Add built-in connection retries using a request session #156 (davecap)
add DatasetMigration resource and migrate functions for Query and Dataset #155 (davecap)
Add support for DatasetExports #154 (davecap)
add exclude_fields param to Query (closes #148) #153 (davecap)
Add retries to Upload creation (fixes #147) #152 (davecap)

v1.15.4 (2017-03-15)

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Merged pull requests:

include randint in deponame also #144 (jsh2134)

v1.15.3 (2017-03-15)

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Closed issues:

Import shortcut isn't playing well with the new capacity argument #139

Merged pull requests:

add more python 3 versions #143 (jsh2134)
fix issue where template fields were not used in dataset creation #141 (davecap)
Fix capacity argument in import dataset command #140 (davecap)

v1.15.2 (2017-03-14)

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Merged pull requests:

fix an issue where the CLI was ignoring env var or other default api_key #138 (davecap)

v1.15.1 (2017-03-12)

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Implemented enhancements:

Add commit_mode details to -h help #136
Allow solvebio import to take a dataset capacity argument #135

Closed issues:

Problem installing solvebio client - curl-config not found #131
Can not import without a template in (update-genome branch) #127

Merged pull requests:

add capacity argument to create-dataset command (closes #135) #137 (davecap)
Provide help message on curl-config error (#131) #132 (jhuttner)
some error responses were not being parsed correctly; this simplifies #130 (davecap)
import shortcut examples #129 (dandanxu)
add commit mode as an import option #128 (jsh2134)
update genome builds upon get_or_create, add new create-dataset command #126 (davecap)

v1.15.0 (2016-12-19)

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Implemented enhancements:

Display upload percentage for file uploads #119

Merged pull requests:

add file wrapper to show upload progress bar (closes #119) #123 (davecap)
add invalid file path name in error #122 (jsh2134)
fix issue where solvebio cli did not open in python3 #121 (davecap)

v1.14.2 (2016-12-13)

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Merged pull requests:

remove trailing commas that broke things, read GZipped template files #118 (jsh2134)

v1.14.1 (2016-12-12)

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Merged pull requests:

create datasets with a template file or without a template at all #117 (jsh2134)
add support for query ordering param (closes #114) #116 (davecap)
add JSON exporter for queries #115 (davecap)
add simple manifest upload example #113 (jsh2134)
First example Python script #112 (dandanxu)
Flat CSV Exporter #95 (jercoh)

v1.14.0 (2016-12-05)

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Implemented enhancements:

Add ordering param for dataset queries #114

Fixed bugs:

[Export] Export should support the query fields parameter instead of always exporting all fields #91

v1.13.6 (2016-10-27)

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Merged pull requests:

handle case where no results are returned in the list object #111 (davecap)
use pyvcf built-in file extension detection and gzip support #110 (davecap)

v1.13.5 (2016-09-15)

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Merged pull requests:

fix the vcf parser for python3 #109 (davecap)
add support for specialized SnpEff ANN field parsing #108 (davecap)

v1.13.4 (2016-08-25)

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Merged pull requests:

add SolveBio variant ID to VCF to JSON parser output #107 (davecap)

v1.13.3 (2016-08-11)

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Closed issues:

[Manifest] Add() not allowing URLs #105

Merged pull requests:

expanduser not expandpath (fixes #105) #106 (davecap)

v1.13.2 (2016-08-03)

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Implemented enhancements:

Filter by number of items in a field #54

Fixed bugs:

Depositories, depository versions, and datasets are not deletable #102

Closed issues:

[Manifest] Add() not allowing my local filepath #101

Merged pull requests:

expanduser prior to checking ispath or isdir in manifest (fixes #101) #104 (davecap)
makes datasets, depository versions, and depositories deletable #103 (davecap)
Add expanding vcf parser as a contrib module #100 (davecap)

v1.13.1 (2016-06-03)

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v1.13.0 (2016-06-03)

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Merged pull requests:

Refactor subcommand arguments; add simple dataset import subcommand #99 (davecap)

v1.12.1 (2016-05-12)

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Fixed bugs:

[Windows] Fix login mechanism on Windows ($HOME not set) #97

Merged pull requests:

use expanduser instead of looking for $HOME manually (fixes #97) #98 (davecap)

v1.12.0 (2016-05-10)

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Merged pull requests:

Add support for uploads and imports #96 (davecap)

v1.11.0 (2016-03-28)

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Fixed bugs:

Add support for login domains #93

Merged pull requests:

adds domain support to login cli (fixes #93) #94 (davecap)

v1.10.0 (2016-03-07)

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Merged pull requests:

Adds Dataset bulk export helper/verification code #92 (davecap)

v1.9.1 (2016-02-10)

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Merged pull requests:

add XLSX exporter #90 (davecap)
Recursively process listed, nested dicts #89 (davecap)
Adds export functionality closes #3 #88 (davecap)

v1.9.0 (2016-02-01)

Full Changelog

Implemented enhancements:

Add support for record lookups to Dataset resource #81

Fixed bugs:

Queries are evaluated twice on failure in some cases #78
Unicode displaying in dataset descriptions #56

Closed issues:

Add test coverage for changelog requests #83
Add test coverage for beacon requests #82
API Key Login not registering? #80
print statement not working in Python 2.7.6 unless wrapped in () #79
Convert old style string replacement with .format() #8
Local datastore bindings for import & export #3

Merged pull requests:

fixes a bug where Query buffering didn't always use the slice starting offset #87 (davecap)
added sbid lookup support in datasets - closes #81 #86 (eyalfoni)
fixes multiple queries with wrong filter closes #78 #85 (eyalfoni)
test_cases_changelog #84 (eyalfoni)

v1.8.1 (2015-07-22)

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v1.8.0 (2015-07-14)

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Closed issues:

Python booleans not supported in filters #75

Merged pull requests:

Adds Python3 support #77 (davecap)

v1.7.11 (2015-03-26)

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Merged pull requests:

Add beacon and changelog endpoints #76 (jsh2134)

v1.7.10 (2015-03-12)

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1.7.9 (2015-02-18)

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1.7.7 (2015-02-04)

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1.7.8 (2015-02-04)

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1.7.6 (2015-01-29)

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1.7.5 (2015-01-26)

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Implemented enhancements:

Easy way to pull out latest available datasets for retrieval in the API #55

Merged pull requests:

improve performance when combining Filters; make it easier to get api_key from local credentials #74 (davecap)

1.7.4 (2014-12-23)

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1.7.3 (2014-12-18)

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1.7.2 (2014-12-15)

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Merged pull requests:

Feature/query refactor #73 (davecap)

1.7.1 (2014-12-08)

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Fixed bugs:

List index out of range error when looping through query #67

1.7.0 (2014-11-28)

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Implemented enhancements:

Handle API rate-limiting in the client #60
Should show a IPaddress/message at launch, if the python-client is not connected to api.solvebio.com #59
On local API, shows "You are not logged in" even if API_KEY and API_HOST are set up. #58
client-side warning for long-iterating queries #53
Pretty print the output of Dataset.fields() #49
Add len() and iteration to ListableAPIResource #38
Pretty printing of resources like depos/versions/datasets/field lists/facets #5

Fixed bugs:

Auth credentials error #72
not specifying protocol in SOLVEBIO_API_HOST breaks login #70
Query __repr__ #62
count() always returns 0 when limit=0 #61
make paging=True the default #52
fix limit semantics #51

Closed issues:

add support for .count() #50
solvebio login shows unusual email default #47
initial double-querying #22
"Cannot detect terminal column width" error in ipython notebooks #21

Merged pull requests:

API host url validation;closes #70 #71 (pgeez)
Feature/hotfix 67 #69 (pgeez)
ListableAPIResources are tabulatable. Set class variable TAB_FIELDS to specify a subset of fields. __init__.py: Don't need whomi, login, or logout in __main__ Split depository test from depositoryversion test #66 (rocky)
add new GenomicFilter for range and position filters on genomic datasets #65 (davecap)
Rework login. Don't store credentials in .netrc. #64 (rocky)
Redo how len() works. len() is number of things one can iterate over. .count() is the total number of items. The old "paging" mode is no more, although one can still set a "page_size". #63 (rocky)
tabulate dataset fields in printing (__str__) #57 (rocky)

1.6.1 (2014-11-03)

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Implemented enhancements:

easier way to logout #42

Fixed bugs:

iPython notebook printing output to terminal instead of screen #43

Merged pull requests:

_ask_for_credentials: default_email is put in prompt *only* if it is str... #48 (rocky)

1.6.0 (2014-10-31)

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Closed issues:

Weird error message when giving password when logging in #41

Merged pull requests:

Address issue #43 and possibly #21 #46 (rocky)
Login/Logout via IPython #45 (rocky)
Depository, DepositoryVersion, Dataset, DatasetField tests. Note: also #40 (rocky)
Travis testing on Python 2.6 #39 (rocky)
Add Annotate and Sample download; some refactoring #37 (rocky)
Feature/annotate download part2 #36 (rocky)
Add flake8 testing from travis #35 (rocky)
Inside solvebio shell allow solvebio.Dataset, solvebio.Depository..., tabulate #32 (rocky)
Feature/annotate broken #31 (rocky)
Sync what we have. There will be a few more updates... #30 (rocky)
Redo tabulate sorting to add as a parameter. #28 (rocky)
Tabulate sort #27 (rocky)
Tabulate #26 (rocky)