reactivate other tests

smirarab · Nov 24, 2024 · 872259c · 872259c
1 parent 8c02040
commit 872259c
Showing 1 changed file with 14 additions and 14 deletions.
diff --git a/.github/workflows/sepp_tests.yml b/.github/workflows/sepp_tests.yml
@@ -35,27 +35,27 @@ jobs:
       run: |
         python setup.py config -c
         python setup.py install
-    # - name: run tests
-    #   shell: bash -el {0}
-    #   run: |
-    #     conda list
-    #     nosetests -w test/unittest --with-doctest --with-coverage
+    - name: run tests
+      shell: bash -el {0}
+      run: |
+        conda list
+        nosetests -w test/unittest --with-doctest --with-coverage
     - name: functional test
       shell: bash -el {0}
       run: |
         mkdir -p sepp-package/sepp/.sepp/
         cp ./.sepp/main.config sepp-package/sepp/.sepp/main.config
         sepp-package/run-sepp.sh test/unittest/data/q2-fragment-insertion/input_fragments.fasta funcTest -x 2 -a test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta -t test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk -r test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info; cat *funcTest-err.log
         diff funcTest_placement.tog.relabelled.tre test/functionaltest/funcTest_q2-tiny_placement.tog.relabelled.tre
-    # - name: convert coverage
-    #   shell: bash -el {0}
-    #   run: |
-    #     coverage lcov
-    # - name: send coverage report.
-    #   uses: coverallsapp/github-action@master
-    #   with:
-    #     github-token: ${{ secrets.GITHUB_TOKEN }}
-    #     path-to-lcov: "coverage.lcov"
+    - name: convert coverage
+      shell: bash -el {0}
+      run: |
+        coverage lcov
+    - name: send coverage report.
+      uses: coverallsapp/github-action@master
+      with:
+        github-token: ${{ secrets.GITHUB_TOKEN }}
+        path-to-lcov: "coverage.lcov"
 
   linting:
     strategy: