Code

Integrate with nnfabrik#2

Code

Merged

eywalker merged 45 commits intosinzlab:mastersinzlab/mei:masterfrom christoph-blessing:masterchristoph-blessing/mei:masterCopy head branch name to clipboardFeb 20, 2020

+780-985

Commits

Commits on Jan 17, 2020

• Initial commit

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• Initial commit

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• Strip output

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Commits on Jan 29, 2020

• Ignore data and .ssh directories

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• Ignore data folder

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• Use two-stage build to clone private repositories

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Commits on Jan 31, 2020

• Make sure key file has the correct permissions

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  e4d2f7c

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• Fix not being able to import nnfabrik and mlutils

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• Initial commit

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• Ignore .idea/

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Commits on Feb 4, 2020

• Mount ./data directory in /data

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• Install JupyterLab extension that enables vim keybindings

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• Add datajoint and nnfabrik as requirements

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• Implement CSRFV1SelectorTemplate

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• Merge branch 'master' of github.com:sinzlab/mei

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• Convert definition property to class attribute

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• Implement MEIMethod table

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Commits on Feb 5, 2020

• Rename method in CSRFV1SelectorTemplate

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• Add comment to MEIMethod table definition

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• Change some attribute names in MEIMethod table

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Commits on Feb 6, 2020

• Store session id in Selector table

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• Change how the output is selected in the Selector table

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• Implement MEI table template

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Commits on Feb 7, 2020

• Move mei method loading logic from MEI template to MEIMethod table

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• Resolve function names when loading mei method

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• Simplify make Method in MEITemplate

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• Save function evaluations in MEI table

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• Move code that inserts mei to separate method

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  5c87387

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• Improve some minor things

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• Move code that determines the input shape to separate method

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Commits on Feb 10, 2020

• Update base docker image

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• Change port for CPU container

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• Save MEI as a numpy array and not as a tensor

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• Implement TrainedEnsembleModel table

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• Save mei as a torch tensor

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• Squeeze MEI before insertion

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• Update docstring of MEITemplate

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• Add comments to TrainedEnsembleModelTemplate table definitions

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Commits on Feb 11, 2020

• Add more docstrings

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• Reorder classes

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Commits on Feb 13, 2020

• Make it such that user does not have to subclass Member table

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• Demonstrate mei integration with nnfabrik

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• Blacken cells

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• Make MEITemplate unaware of neuron_id

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• Move gradient ascent logic to MEIMethod table

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