Improve import and export functions #818
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* Properly documented options `all_triples` (all statements where an ontology individual is the subject) and `all_statements` (all RDF statements) to enable importing and exporting RDF statements that are not supported by SimPhoNy. * Add tests for `all_triples` and `all_statements`. Fix `test_api_importexport_data.json` (did not match the turtle and xml versions). * Rename `path_or_filelike` argument of `import_file` to `file`. * Treat IRIs with type `owl:NamedIndividual` as individuals of class `owl:Thing`.
for more information, see https://pre-commit.ci
…dded is the subject.
# Conflicts: # simphony_osp/session/session.py
for more information, see https://pre-commit.ci
for more information, see https://pre-commit.ci
…ith the entities to be added. Remove the warning for references to individuals that are not being added simultaneously.
for more information, see https://pre-commit.ci
* Raise exception when importing references to unknown individuals, terminological knowledge, or individuals of an unknown class. * Raise exception when exporting references to unknown individuals, terminological knowledge, or individuals of an unknown class.
for more information, see https://pre-commit.ci
for more information, see https://pre-commit.ci
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Properly documented options
all_triples(all statements where an ontology individual is the subject) andall_statements(all RDF statements) to enable importing and exporting RDF statements that are not supported by SimPhoNy.Add tests for
all_triplesandall_statements. Fixtest_api_importexport_data.json(did not match the turtle and xml versions).Rename
path_or_filelikeargument ofimport_filetofile.Treat IRIs with type
owl:NamedIndividualas individuals of classowl:Thing.Warn when ignoring RDF statements where an individual that is being added is the subject.
Emit warnings on add when uninterpretable statements are included with the entities to be added. Remove the warning for references to individuals that are not being added simultaneously.
Raise exception when importing references to unknown individuals, terminological knowledge, or individuals of an unknown class.
Do not overwrite individuals when importing.