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Create a submission script #33

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stephenturner opened this issue Dec 23, 2021 · 1 comment
Closed

Create a submission script #33

stephenturner opened this issue Dec 23, 2021 · 1 comment

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@stephenturner
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stephenturner commented Dec 23, 2021

After getting all the necessary components down, need to create a submission workflow script that will:

  1. bring in necessary data (get hosp and vax data #1 get hosp and vax data #2 bring in ili and hosp data from cdcfluview #5)
  2. do any necessary covariate forecasting (forecast ILI #23)
  3. fit models (glm #24)
  4. format for submission (Forecast submission formatting #10)
  5. validate forecasts (forecast validation #12)
  6. visualize forecasts (Function to visualize forecasts #11)
  7. stick it in a submission subdirectory with metadata (Model metadata.txt #16), and add to .Rbuildignore

For reference:

@stephenturner
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see also #60

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