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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 1k 183

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 82 36

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 66 29

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 59 17

  5. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 46 15

  6. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 46 12

Repositories

Showing 10 of 130 repositories
  • ESTScan Public archive

    ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts.

    sib-swiss/ESTScan’s past year of commit activity
    Perl 0 0 0 0 Updated Apr 11, 2025
  • ds-package-creator Public

    Split a R package into a "client" and "server" version , datashield ready.

    sib-swiss/ds-package-creator’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Apr 11, 2025
  • EPD Public

    The Eukaryotic Promoter Database (EPD) website

    sib-swiss/EPD’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Apr 11, 2025
  • intro-bayesian-statistics-training Public

    SIB course on bayesian statistics with applications using Rstan

    sib-swiss/intro-bayesian-statistics-training’s past year of commit activity
    HTML 32 CC-BY-4.0 10 0 0 Updated Apr 11, 2025
  • kgsteward Public

    Knowledge Graph Steward - Command line tool to help manage RDF store

    sib-swiss/kgsteward’s past year of commit activity
    Python 6 GPL-3.0 2 0 0 Updated Apr 10, 2025
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples’s past year of commit activity
    HTML 14 17 6 (1 issue needs help) 4 Updated Apr 10, 2025
  • NGS-introduction-training Public Forked from sib-swiss/sequencing-data-analysis-training

    SIB course that introduces analysis of NGS data

    sib-swiss/NGS-introduction-training’s past year of commit activity
    Shell 0 CC-BY-4.0 13 0 0 Updated Apr 9, 2025
  • sequencing-data-analysis-training Public

    SIB course that introduces analysis of NGS data

    sib-swiss/sequencing-data-analysis-training’s past year of commit activity
    Shell 16 CC-BY-4.0 13 4 0 Updated Apr 9, 2025
  • sib-swiss/training-cookbook’s past year of commit activity
    0 0 0 0 Updated Apr 9, 2025
  • pyrheadb Public

    Repository for the Python package intended to facilitate access to Rhea data from Python

    sib-swiss/pyrheadb’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 8, 2025