Fix missing call of umap calculation in test label transfer

scverse · Sep 30, 2024 · 8660301 · 8660301
1 parent db24e81
commit 8660301
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/tests/tools/_perturbation_space/test_simple_perturbation_space.py b/tests/tools/_perturbation_space/test_simple_perturbation_space.py
@@ -246,6 +246,7 @@ def test_label_transfer():
         ps.label_transfer(adata)
 
     sc.pp.neighbors(adata, use_rep="X")
+    sc.tl.umap(adata)
     ps = pt.tl.PseudobulkSpace()
     ps.label_transfer(adata)
     assert "unknown" not in adata.obs["perturbation"]