Merge pull request #533 from satijalab/doc/releasenotes

Update release notes

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: Seurat
-Version: 4.0.0.9005
-Date: 2021-02-12
+Version: 4.0.0.9006
+Date: 2021-02-22
 Title: Tools for Single Cell Genomics
 Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
 Authors@R: c(

NEWS.md

@@ -6,6 +6,7 @@
 ## Changes
 - `Read10X()` now prepends dataset number for first dataset when reading multiple datasets
 - Bug fix for `subset.AnchorSet()`
+- Bug fix for fold change values in `FindMarkers()` when setting a different pseudocount ([#4111](https://github.com/satijalab/seurat/pull/4111))
 
 # Seurat 4.0.0 (2020-01-27) 
 ## Added

R/differential_expression.R

@@ -627,6 +627,7 @@ FindMarkers.Assay <- function(
     cells.1 = cells.1,
     cells.2 = cells.2,
     features = features,
+    pseudocount.use = pseudocount.use,
     mean.fxn = mean.fxn,
     fc.name = fc.name,
     base = base
@@ -680,6 +681,7 @@ FindMarkers.DimReduc <- function(
   min.cells.group = 3,
   pseudocount.use = 1,
   mean.fxn = rowMeans,
+  fc.name = NULL,
   ...
 
 ) {
@@ -705,7 +707,9 @@ FindMarkers.DimReduc <- function(
     object = object,
     cells.1 = cells.1,
     cells.2 = cells.2,
-    features = features
+    features = features,
+    mean.fxn = mean.fxn,
+    fc.name = fc.name
   )
   # subsample cell groups if they are too large
   if (max.cells.per.ident < Inf) {