Upgrade to samtools 1.21.

samtools · Jan 6, 2025 · a71f9a9 · a71f9a9
1 parent a8a7e55
commit a71f9a9
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/scripts/install-samtools.sh b/scripts/install-samtools.sh
@@ -6,7 +6,7 @@ sudo apt-get upgrade
 sudo apt-get install -y libncurses-dev libbz2-dev liblzma-dev
 
 #install from the github tar
-export SAMTOOLS_VERSION=1.19.1
+export SAMTOOLS_VERSION=1.21
 wget https://github.com/samtools/samtools/releases/download/${SAMTOOLS_VERSION}/samtools-${SAMTOOLS_VERSION}.tar.bz2
 tar -xjvf samtools-${SAMTOOLS_VERSION}.tar.bz2
 cd samtools-${SAMTOOLS_VERSION} && ./configure --prefix=/usr && make && sudo make install
diff --git a/src/test/java/htsjdk/utils/SamtoolsTestUtils.java b/src/test/java/htsjdk/utils/SamtoolsTestUtils.java
@@ -14,8 +14,7 @@
  */
 public class SamtoolsTestUtils {
     private static final String SAMTOOLS_BINARY_ENV_VARIABLE = "HTSJDK_SAMTOOLS_BIN";
-    public final static String expectedSamtoolsVersion = "1.19.1";
-    public final static String expectedHtslibVersion = "1.19";
+    public final static String expectedSamtoolsVersion = "1.21";
 
     /**
      * @return true if samtools is available, otherwise false