fixed module name in codecov config #8
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| name: ci | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -e {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: ['3.12'] | |
| os: [ubuntu-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| MODULE: omnipath_server | |
| PG_USER: omnipath | |
| PG_PASSWORD: omnipath | |
| PG_DB: omnipath | |
| PG_HOST: localhost | |
| PG_PORT: 5432 | |
| services: | |
| postgres: | |
| image: postgres:17 | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_USER: ${{ env.PG_USER }} | |
| POSTGRES_PASSWORD: ${{ env.PG_PASSWORD }} | |
| POSTGRES_DB: ${{ env.PG_DB }} | |
| steps: | |
| - name: Check out main | |
| uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: System dependencies Linux | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev | |
| - name: System dependencies OSX | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| run: | | |
| brew install openssl | |
| export LDFLAGS="-L/usr/local/opt/openssl@3/lib" | |
| export CPPFLAGS="-I/usr/local/opt/openssl@3/include" | |
| export PKG_CONFIG_PATH="/usr/local/opt/openssl@3/lib/pkgconfig" | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| installer-parallel: true | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ matrix.python }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install dependencies | |
| if: ${{ steps.cached-poetry-dependencies.outputs.cache-hit != 'true' }} | |
| run: poetry install --no-interaction --no-root | |
| - name: Install library | |
| run: poetry install --no-interaction | |
| - name: Wait for Postgres to be ready | |
| run: | | |
| echo 'Waiting for Postgres' | |
| for i in {1..30}; do | |
| if pg_isready -h $PG_HOST -p $PG_PORT -U $PG_USER; then | |
| echo 'Postgres is ready after $((i * 2)) seconds' | |
| break | |
| fi | |
| sleep 2 | |
| done | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| poetry run flake8 $MODULE \ | |
| --count \ | |
| --select=E9,F63,F7,F82 \ | |
| --show-source \ | |
| --statistics | |
| # exit-zero treats all errors as warnings | |
| poetry run flake8 $MODULE \ | |
| --count \ | |
| --exit-zero \ | |
| --max-complexity=10 \ | |
| --max-line-length=127 \ | |
| --statistics | |
| - name: Set up Postgres connection config | |
| run: | | |
| echo 'user: ${{ env.PG_USER }}' > 'db_config.yaml' | |
| echo 'password: ${{ env.PG_PASSWORD }}' >> 'db_config.yaml' | |
| echo 'database: ${{ env.PG_DB }}' >> 'db_config.yaml' | |
| echo 'host: ${{ env.PG_HOST }}' >> 'db_config.yaml' | |
| echo 'port: ${{ env.PG_PORT }}' >> 'db_config.yaml' | |
| - name: Tests and test coverage | |
| if: ${{ github.event_name == 'push' }} | |
| run: | | |
| poetry run pytest -v \ | |
| --cov \ | |
| --color=yes \ | |
| --durations=0 \ | |
| --disable-warnings \ | |
| --db-config=db_config.yaml | |
| - name: Tests | |
| if: ${{ github.event_name == 'pull_request' }} | |
| run: | | |
| poetry run pytest -v \ | |
| --color=yes \ | |
| --durations=0 \ | |
| --disable-warnings | |
| --db-config=db_config.yaml | |
| - name: Upload coverage reports to Codecov | |
| if: ${{ github.event_name == 'push' }} | |
| env: | |
| CODECOV_NAME: ${{ matrix.python }}-${{ matrix.os }} | |
| run: | | |
| poetry run codecovcli \ | |
| --verbose upload-process \ | |
| -t ${{ secrets.CODECOV_TOKEN }} \ | |
| -n 'std'-${{ github.run_id }} |