Repro spurious DoesNotExistError #93
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| name: 'rm SOMA `Slice.__subclasscheck__`' | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| runs-on: | |
| description: Host | |
| default: ubuntu-20.04 | |
| tdbs-ref: | |
| description: TileDB-SOMA branch or tag to clone | |
| default: rw/tg | |
| soma-org: | |
| description: Org to clone single-cell-data/SOMA from | |
| type: choice | |
| default: ryan-williams | |
| options: | |
| - single-cell-data | |
| - ryan-williams | |
| soma-refs: | |
| description: single-cell-data/SOMA branch or tag to clone | |
| default: '"main", "slc"' | |
| soma-pretend-version: | |
| description: "Set the SOMA version, to satisfy TileDB-SOMA's pin (despite a shallow SOMA clone that's unable to compute a sensible version for itself)" | |
| default: '1.0.21' | |
| python-versions: | |
| description: Python versions to test | |
| default: '"3.9.10", "3.9.19", "3.12.7"' | |
| typeguard-versions: | |
| description: Typeguard versions to test | |
| default: '"4.2.1", "4.3.0", "4.4.0"' | |
| tests: | |
| description: Tests to run (under apis/python/) | |
| default: 'tests/test_dataframe_index_columns.py::test_types_no_errors[soma_joinid-py-slice-index_column_names4-domain4-coords4-expecteds4]' | |
| jobs: | |
| job: | |
| strategy: | |
| matrix: | |
| typeguard-version: ${{ fromJSON(format('[{0}]', inputs.typeguard-versions)) }} | |
| soma-ref: ${{ fromJSON(format('[{0}]', inputs.soma-refs)) }} | |
| python-version: ${{ fromJSON(format('[{0}]', inputs.python-versions)) }} | |
| fail-fast: false | |
| name: '${{ matrix.python-version }} ${{ matrix.soma-ref }} ${{ matrix.typeguard-version }}' | |
| runs-on: ${{ inputs.runs-on }} | |
| steps: | |
| - name: Checkout ${{ inputs.soma-org }}/SOMA@${{ matrix.soma-ref }} | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ inputs.soma-org }}/SOMA | |
| ref: ${{ matrix.soma-ref }} | |
| path: soma | |
| - name: Checkout TileDB-SOMA@${{ inputs.tdbs-ref }} | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: single-cell-data/TileDB-SOMA | |
| ref: ${{ inputs.tdbs-ref }} | |
| path: tdbs | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install SOMA, TileDB-SOMA | |
| env: | |
| SETUPTOOLS_SCM_PRETEND_VERSION_FOR_SOMACORE: ${{ inputs.soma-pretend-version }} | |
| run: | | |
| pip install -e tdbs/apis/python[dev] -e soma | |
| pip install typeguard==${{ matrix.typeguard-version }} # Install separately, to avoid tdbs pin | |
| - run: make data | |
| working-directory: tdbs | |
| - name: Run tests | |
| run: pytest --maxfail=10 ${{ inputs.tests }} | |
| working-directory: tdbs/apis/python |