make document updates

.github/.vscode/settings.json

@@ -0,0 +1,3 @@
+{
+    "svn.ignoreMissingSvnWarning": true
+}

index.html

@@ -1,12 +1,12 @@
 <h2>REnv.dll</h2>
 
     <ul>
-        <li><a href="./vignettes/REnv/applys.html">applys</a></li><li><a href="./vignettes/REnv/base.html">base</a></li><li><a href="./vignettes/REnv/bitView.html">bitView</a></li><li><a href="./vignettes/REnv/devtools.html">devtools</a></li><li><a href="./vignettes/REnv/RCurl.html">RCurl</a></li><li><a href="./vignettes/REnv/rust.html">rust</a></li><li><a href="./vignettes/REnv/env.html">env</a></li><li><a href="./vignettes/REnv/etc.html">etc</a></li><li><a href="./vignettes/REnv/file.html">file</a></li><li><a href="./vignettes/REnv/graphics.html">graphics</a></li><li><a href="./vignettes/REnv/linq.html">linq</a></li><li><a href="./vignettes/REnv/reshape2.html">reshape2</a></li><li><a href="./vignettes/REnv/search.html">search</a></li><li><a href="./vignettes/REnv/math.html">math</a></li><li><a href="./vignettes/REnv/ranking.html">ranking</a></li><li><a href="./vignettes/REnv/time.html">time</a></li><li><a href="./vignettes/REnv/reflections.html">reflections</a></li><li><a href="./vignettes/REnv/set.html">set</a></li><li><a href="./vignettes/REnv/humanReadable.html">humanReadable</a></li><li><a href="./vignettes/REnv/stringr.html">stringr</a></li><li><a href="./vignettes/REnv/strings.html">strings</a></li><li><a href="./vignettes/REnv/utils.html">utils</a></li>
+        <li><a href="./vignettes/REnv/bitView.html">bitView</a></li><li><a href="./vignettes/REnv/devtools.html">devtools</a></li><li><a href="./vignettes/REnv/RCurl.html">RCurl</a></li><li><a href="./vignettes/REnv/rust.html">rust</a></li><li><a href="./vignettes/REnv/graphics.html">graphics</a></li><li><a href="./vignettes/REnv/linq.html">linq</a></li><li><a href="./vignettes/REnv/reshape2.html">reshape2</a></li><li><a href="./vignettes/REnv/search.html">search</a></li><li><a href="./vignettes/REnv/math.html">math</a></li><li><a href="./vignettes/REnv/ranking.html">ranking</a></li><li><a href="./vignettes/REnv/time.html">time</a></li><li><a href="./vignettes/REnv/reflections.html">reflections</a></li><li><a href="./vignettes/REnv/set.html">set</a></li><li><a href="./vignettes/REnv/humanReadable.html">humanReadable</a></li><li><a href="./vignettes/REnv/stringr.html">stringr</a></li><li><a href="./vignettes/REnv/strings.html">strings</a></li><li><a href="./vignettes/REnv/utils.html">utils</a></li>
     </ul>
 <h2>Rlapack.dll</h2>
 
     <ul>
-        <li><a href="./vignettes/Rlapack/lpSolve.html">lpSolve</a></li><li><a href="./vignettes/Rlapack/math.html">math</a></li><li><a href="./vignettes/Rlapack/Matrix.html">Matrix</a></li><li><a href="./vignettes/Rlapack/stats.html">stats</a></li><li><a href="./vignettes/Rlapack/symbolic.html">symbolic</a></li>
+        <li><a href="./vignettes/Rlapack/lpSolve.html">lpSolve</a></li><li><a href="./vignettes/Rlapack/math.html">math</a></li><li><a href="./vignettes/Rlapack/stats.html">stats</a></li><li><a href="./vignettes/Rlapack/symbolic.html">symbolic</a></li>
     </ul>
 <h2>roxygenNet.dll</h2>
 
@@ -36,22 +36,22 @@ <h2>webKit.dll</h2>
 <h2>base.dll</h2>
 
     <ul>
-        <li><a href="./vignettes/base/base.html">base</a></li><li><a href="./vignettes/base/HDF5.utils.html">HDF5.utils</a></li><li><a href="./vignettes/base/HDS.html">HDS</a></li><li><a href="./vignettes/base/IO.html">IO</a></li><li><a href="./vignettes/base/netCDF.utils.html">netCDF.utils</a></li><li><a href="./vignettes/base/buffer.html">buffer</a></li><li><a href="./vignettes/base/console.html">console</a></li><li><a href="./vignettes/base/JSON.html">JSON</a></li><li><a href="./vignettes/base/jsonlite.html">jsonlite</a></li><li><a href="./vignettes/base/stringr.html">stringr</a></li>
+        <li><a href="./vignettes/base/base.html">base</a></li><li><a href="./vignettes/base/HDF5.utils.html">HDF5.utils</a></li><li><a href="./vignettes/base/HDS.html">HDS</a></li><li><a href="./vignettes/base/netCDF.utils.html">netCDF.utils</a></li><li><a href="./vignettes/base/buffer.html">buffer</a></li><li><a href="./vignettes/base/console.html">console</a></li><li><a href="./vignettes/base/JSON.html">JSON</a></li><li><a href="./vignettes/base/jsonlite.html">jsonlite</a></li><li><a href="./vignettes/base/stringr.html">stringr</a></li>
     </ul>
 <h2>devkit.dll</h2>
 
     <ul>
-        <li><a href="./vignettes/devkit/clr.html">clr</a></li><li><a href="./vignettes/devkit/VisualStudio.html">VisualStudio</a></li><li><a href="./vignettes/devkit/github.html">github</a></li><li><a href="./vignettes/devkit/javascript.html">javascript</a></li><li><a href="./vignettes/devkit/package_utils.html">package_utils</a></li><li><a href="./vignettes/devkit/sqlite.html">sqlite</a></li><li><a href="./vignettes/devkit/automation.html">automation</a></li>
+        <li><a href="./vignettes/devkit/VisualStudio.html">VisualStudio</a></li><li><a href="./vignettes/devkit/github.html">github</a></li><li><a href="./vignettes/devkit/javascript.html">javascript</a></li><li><a href="./vignettes/devkit/package_utils.html">package_utils</a></li><li><a href="./vignettes/devkit/sqlite.html">sqlite</a></li><li><a href="./vignettes/devkit/automation.html">automation</a></li>
     </ul>
 <h2>graphics.dll</h2>
 
     <ul>
-        <li><a href="./vignettes/graphics/ColorBrewer.html">ColorBrewer</a></li><li><a href="./vignettes/graphics/grDevices.html">grDevices</a></li><li><a href="./vignettes/graphics/grDevices.SVG.html">grDevices.SVG</a></li><li><a href="./vignettes/graphics/filter.html">filter</a></li><li><a href="./vignettes/graphics/geometry2D.html">geometry2D</a></li><li><a href="./vignettes/graphics/graphics2D.labeler.html">graphics2D.labeler</a></li><li><a href="./vignettes/graphics/graphics2D.html">graphics2D</a></li><li><a href="./vignettes/graphics/charts.html">charts</a></li><li><a href="./vignettes/graphics/grDevices3D.html">grDevices3D</a></li><li><a href="./vignettes/graphics/chart3D.html">chart3D</a></li><li><a href="./vignettes/graphics/graphics.html">graphics</a></li>
+        <li><a href="./vignettes/graphics/ColorBrewer.html">ColorBrewer</a></li><li><a href="./vignettes/graphics/grDevices.html">grDevices</a></li><li><a href="./vignettes/graphics/grDevices.SVG.html">grDevices.SVG</a></li><li><a href="./vignettes/graphics/filter.html">filter</a></li><li><a href="./vignettes/graphics/geometry2D.html">geometry2D</a></li><li><a href="./vignettes/graphics/graphics2D.labeler.html">graphics2D.labeler</a></li><li><a href="./vignettes/graphics/charts.html">charts</a></li><li><a href="./vignettes/graphics/grDevices3D.html">grDevices3D</a></li><li><a href="./vignettes/graphics/chart3D.html">chart3D</a></li><li><a href="./vignettes/graphics/graphics.html">graphics</a></li>
     </ul>
 <h2>igraph.dll</h2>
 
     <ul>
-        <li><a href="./vignettes/igraph/igraph.builder.html">igraph.builder</a></li><li><a href="./vignettes/igraph/igraph.comparison.html">igraph.comparison</a></li><li><a href="./vignettes/igraph/igraph.dijkstra.html">igraph.dijkstra</a></li><li><a href="./vignettes/igraph/layouts.html">layouts</a></li><li><a href="./vignettes/igraph/igraph.html">igraph</a></li><li><a href="./vignettes/igraph/styler.html">styler</a></li><li><a href="./vignettes/igraph/visualizer.html">visualizer</a></li>
+        <li><a href="./vignettes/igraph/igraph.builder.html">igraph.builder</a></li><li><a href="./vignettes/igraph/igraph.comparison.html">igraph.comparison</a></li><li><a href="./vignettes/igraph/igraph.dijkstra.html">igraph.dijkstra</a></li><li><a href="./vignettes/igraph/layouts.html">layouts</a></li><li><a href="./vignettes/igraph/styler.html">styler</a></li><li><a href="./vignettes/igraph/visualizer.html">visualizer</a></li>
     </ul>
 <h2>MLkit.dll</h2>
 

vignettes/MLkit/CNN.html

@@ -73,7 +73,19 @@ <h1>CNN</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: block">
+        <caption>.NET clr type export</caption>
+        <tbody><tr>
+  <td id="cnn">
+    <a href="/vignettes/clr/Microsoft/VisualBasic/MachineLearning/CNN/LayerBuilder.html">cnn: LayerBuilder</a>
+  </td>
+  <td></td>
+</tr></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="n_threads">
     <a href="./CNN/n_threads.html">n_threads</a>

vignettes/MLkit/GA_toolkit.html

@@ -73,7 +73,14 @@ <h1>GA_toolkit</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="template">
     <a href="./GA_toolkit/template.html">template</a>

vignettes/MLkit/NLP.html

@@ -73,7 +73,14 @@ <h1>NLP</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="segmentation">
     <a href="./NLP/segmentation.html">segmentation</a>

vignettes/MLkit/SVM.html

@@ -73,7 +73,32 @@ <h1>SVM</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: block">
+        <caption>.NET clr type export</caption>
+        <tbody><tr>
+  <td id="problem">
+    <a href="/vignettes/clr/Microsoft/VisualBasic/MachineLearning/SVM/Problem.html">problem: Problem</a>
+  </td>
+  <td><p>Encapsulates a problem, or set of vectors which must be classified.</p></td>
+</tr>
+<tr>
+  <td id="svm">
+    <a href="/vignettes/clr/Microsoft/VisualBasic/MachineLearning/SVM/SVMModel.html">svm: SVMModel</a>
+  </td>
+  <td><p>A trained svm data model that can be apply for classify analysis.</p></td>
+</tr>
+<tr>
+  <td id="svmSet">
+    <a href="/vignettes/clr/Microsoft/VisualBasic/MachineLearning/SVM/SVMMultipleSet.html">svmSet: SVMMultipleSet</a>
+  </td>
+  <td><p>A collection of trained svm data model that can be apply for <br />
+ multiple dimension class classify analysis.</p></td>
+</tr></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="problem.trim">
     <a href="./SVM/problem.trim.html">problem.trim</a>

vignettes/MLkit/VAE.html

@@ -73,7 +73,14 @@ <h1>VAE</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="vae">
     <a href="./VAE/vae.html">vae</a>

vignettes/MLkit/clustering.html

@@ -73,7 +73,14 @@ <h1>clustering</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="gmm">
     <a href="./clustering/gmm.html">gmm</a>
@@ -162,6 +169,12 @@ <h1>clustering</h1>
   </td>
   <td><p>evaluate density of the raw data</p></td>
 </tr>
+<tr>
+  <td id="clusters">
+    <a href="./clustering/clusters.html">clusters</a>
+  </td>
+  <td><p>get or set the cluster class labels</p></td>
+</tr>
 <tr>
   <td id="cluster.groups">
     <a href="./clustering/cluster.groups.html">cluster.groups</a>

vignettes/MLkit/clustering/clusters.html

@@ -0,0 +1,76 @@
+<!DOCTYPE html>
+<html>
+
+<head>
+    <title>get or set the cluster class labels</title>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
+    <link rel="stylesheet" type="text/css" href="../../_assets/page.css">
+</head>
+
+<body>
+    <div class="container">
+
+        <table style="width: 100%;">
+            <tr>
+                <td>clusters {clustering}</td>
+                <td style="text-align: right;">R Documentation</td>
+            </tr>
+        </table>
+
+        <h2>get or set the cluster class labels</h2>
+
+        <h3>Description</h3>
+
+
+
+        <h3>Usage</h3>
+
+        <div style="width: 100%; padding-left: 3%; color: black;">
+            <pre><code class='language-R' style="color: black; font-weight:normal;"><strong>clusters</strong>(<i>x</i>,
+    <i>class</i> = <span style='color: blue !important;'>NULL</span>);</code></pre>
+        </div>
+
+        <h3>Arguments</h3>
+
+        <table>
+
+<dt>x</dt>
+<dd><p><p>-</p></p></dd>
+
+
+<dt>[class]</dt>
+<dd><p><p>-</p></p></dd>
+
+
+<dt>env</dt>
+<dd><p><p>-</p></p></dd>
+
+        </table>
+
+
+        <h3 style="display: none;">Details</h3>
+
+
+
+
+        <h3>Value</h3>
+
+        this function returns data object of type <i>any</i> kind.<h4>clr value class</h4><ul><li><i>any</i> kind</li></ul>
+
+        <h3 style="display: none;">Examples</h3>
+
+
+
+        <hr />
+        <div style="text-align: center;">[Package <em>clustering</em> version 1.0.0.0 <a
+                href="../clustering.html">Index</a>]
+        </div>
+    </div>
+</body>
+
+<script type="text/javascript" src="../../_assets/R_syntax.js"></script>
+<script type="text/javascript" src="../../_assets/highlights.js"></script>
+<script type="text/javascript">r_highlights("example_r");</script>
+
+</html>

vignettes/MLkit/clustering/getTraceback.html

@@ -27,7 +27,8 @@ <h3>Description</h3>
         <h3>Usage</h3>
 
         <div style="width: 100%; padding-left: 3%; color: black;">
-            <pre><code class='language-R' style="color: black; font-weight:normal;"><strong>getTraceback</strong>();</code></pre>
+            <pre><code class='language-R' style="color: black; font-weight:normal;"><strong>getTraceback</strong>(
+    <i>x</i> = <span style='color: blue !important;'>NULL</span>);</code></pre>
         </div>
 
         <h3>Arguments</h3>
@@ -44,7 +45,7 @@ <h3 style="display: none;">Details</h3>
 
         <h3>Value</h3>
 
-        this function returns data object of type list.<h4>clr value class</h4><ul><li>list</li></ul>
+        this function returns data object of type <a href="/vignettes/clr/MLkit/TracebackMatrix.html">TracebackMatrix</a>.<h4>clr value class</h4><ul><li><a href="/vignettes/clr/MLkit/TracebackMatrix.html">TracebackMatrix</a></li></ul>
 
         <h3 style="display: none;">Examples</h3>
 

vignettes/MLkit/dataset.html

@@ -83,7 +83,19 @@ <h3>the machine learning dataset toolkit</h3>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: block">
+        <caption>.NET clr type export</caption>
+        <tbody><tr>
+  <td id="data_matrix">
+    <a href="/vignettes/clr/MLkit/UnionMatrix.html">data_matrix: UnionMatrix</a>
+  </td>
+  <td><p>A matrix for the sparse numeric (double) data.</p></td>
+</tr></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="SGT">
     <a href="./dataset/SGT.html">SGT</a>

vignettes/MLkit/hiddenMarkov.html

@@ -73,7 +73,25 @@ <h1>hiddenMarkov</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: block">
+        <caption>.NET clr type export</caption>
+        <tbody><tr>
+  <td id="state">
+    <a href="/vignettes/clr/Microsoft/VisualBasic/DataMining/HiddenMarkovChain/Models/StatesObject.html">state: StatesObject</a>
+  </td>
+  <td></td>
+</tr>
+<tr>
+  <td id="observable">
+    <a href="/vignettes/clr/Microsoft/VisualBasic/DataMining/HiddenMarkovChain/Models/Observable.html">observable: Observable</a>
+  </td>
+  <td></td>
+</tr></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="as.statesMatrix">
     <a href="./hiddenMarkov/as.statesMatrix.html">as.statesMatrix</a>

vignettes/MLkit/machineLearning.html

@@ -73,7 +73,14 @@ <h1>machineLearning</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="softmax">
     <a href="./machineLearning/softmax.html">softmax</a>

vignettes/MLkit/t-SNE.html

@@ -73,7 +73,14 @@ <h1>t-SNE</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="t.SNE">
     <a href="./t-SNE/t.SNE.html">t.SNE</a>

vignettes/MLkit/umap.html

@@ -73,7 +73,14 @@ <h1>umap</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="umap">
     <a href="./umap/umap.html">umap</a>

vignettes/MLkit/validation.html

@@ -73,7 +73,14 @@ <h1>validation</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="AUC">
     <a href="./validation/AUC.html">AUC</a>

vignettes/MLkit/xgboost.html

@@ -73,7 +73,14 @@ <h1>xgboost</h1>
                            </p>
     </blockquote>
     <div id="main-wrapper">
+      <table class="table-three-line" style="display: none">
+        <caption>.NET clr type export</caption>
+        <tbody></tbody>
+      </table>
+      <br />
+      <br />
       <table class="table-three-line">
+        <caption>.NET clr function exports</caption>
         <tbody><tr>
   <td id="xgboost">
     <a href="./xgboost/xgboost.html">xgboost</a>