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Everything everywhere all at once#94

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roaldarbol merged 56 commits intomainroaldarbol/animovement:mainfrom everything_everywhere_all_at_onceroaldarbol/animovement:everything_everywhere_all_at_onceCopy head branch name to clipboardJan 3, 2025

+11,023-617

Commits

Commits on Dec 12, 2024

• Lots of new functions! Still rough

  

  Mikkel Roald-Arbøl

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  57d6b36

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• Mostly docstrings and a few modifications.

  

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  72cd715

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• A few name changes

  

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  db721a8

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• Log y-axis on check_poses

  

  Mikkel Roald-Arbøl

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  33f4790

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• Fix. Also silence ggplot

  

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  b95b92a

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• Add reference_keypoint to check_pose

  

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• Add doc and export to replace_na

  

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• Allow na_interpolation to return an unfiltered data frame with a warning

  

  Mikkel Roald-Arbøl

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• Pathc to last commit

  

  Mikkel Roald-Arbøl

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  d817a39

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• Another small patch

  

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  d692715

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• Allow plotting of all NAs in check_na_timing

  

  Mikkel Roald-Arbøl

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  efcbe5b

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• Add min_obs parameter to smooth_movement

  

  Mikkel Roald-Arbøl

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Commits on Dec 13, 2024

• Hopefully improve speed of translate_coords_keypoint

  

  Mikkel Roald-Arbøl

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  4d752ea

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Commits on Dec 14, 2024

• lots of new functions and test data moved

  

  Mikkel Roald-Arbøl

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  9e47f16

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• Just filename changes

  

  Mikkel Roald-Arbøl

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  d40e5e0

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• Just docs and patches to ensure successful building

  

  Mikkel Roald-Arbøl

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  906c0f1

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• Add better read_trex docstring

  

  Mikkel Roald-Arbøl

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  530e868

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• Merge pull request #87 from roaldarbol/main

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Commits on Dec 15, 2024

• Expose and add documentation to set_individual and set_framerate

  

  Mikkel Roald-Arbøl

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• Add imports

  

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  6a304fd

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• Expport set_ functions and update get_example_data

  

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  91afc51

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• Add to NAMESPACE

  

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  0177652

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• Fix time series plots when all values are NA

  

  Mikkel Roald-Arbøl

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  c58f8ca

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• Tiny patch

  

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Commits on Dec 16, 2024

• Add peak/trough detection

  

  Mikkel Roald-Arbøl

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  be0c861

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• Great improvements the extrema detection functions. Also lots of testing.

  

  Mikkel Roald-Arbøl

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  7111681

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• Add movement classification

  

  Mikkel Roald-Arbøl

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• Export classification

  

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• And add it to NAMESPACE

  

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  2d5e44d

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• Merge branch 'everything_everywhere_all_at_once' of https://github.com/roaldarbol/animovement into everything_everywhere_all_at_once

  

  Mikkel Roald-Arbøl

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  add149a

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Commits on Dec 17, 2024

• Fix bug in filter_by_speed

  

  Mikkel Roald-Arbøl

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  6b71fbc

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• Add NA tests

  

  Mikkel Roald-Arbøl

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  4f1e22e

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• Bug fix for calculate_kinematics - added group_by keypoint and individual

  

  Mikkel Roald-Arbøl

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  b547bfd

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• Fix set_framerate so it detects whether a frame rate has previously been set.

  

  Mikkel Roald-Arbøl

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  679d30c

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Commits on Dec 19, 2024

• Add bandwidth filters

  

  Mikkel Roald-Arbøl

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  a497269

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• Updates to the classification functions

  

  Mikkel Roald-Arbøl

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  d5b0ec6

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• Changed method names in smooth_movement function

  

  Mikkel Roald-Arbøl

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  414e90b

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• Added NA testing for filter_by_speed

  

  Mikkel Roald-Arbøl

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  eb39902

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• Add return_type parameter

  

  Mikkel Roald-Arbøl

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  fe972ff

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• Add return_type parameter

  

  Mikkel Roald-Arbøl

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  1d35cfc

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• Merge branch 'everything_everywhere_all_at_once' of https://github.com/roaldarbol/animovement into everything_everywhere_all_at_once

  

  Mikkel Roald-Arbøl

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  4685c92

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• Clean-up

  

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  d746502

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• Patch

  

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  ca26260

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• Another patch

  

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  b05dca9

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• Patch again

  

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  6a1a08c

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Commits on Dec 20, 2024

• Improved bandwidth filters

  

  Mikkel Roald-Arbøl

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• Adds Kalman filters

  

  Mikkel Roald-Arbøl

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Commits on Dec 21, 2024

• Add rotation of coordinates and egocentric transformation

  

  Mikkel Roald-Arbøl

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Commits on Dec 25, 2024

• Alignment of timeseries and classification w peak+trough

  

  Mikkel Roald-Arbøl

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• Improve detection of active periods

  

  Mikkel Roald-Arbøl

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Commits on Dec 26, 2024

• Adds replace_na functions and classify_low_periods

  

  Mikkel Roald-Arbøl

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Commits on Jan 3, 2025

• Filtering functions

  

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• Calculations

  

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• Filter NA functions

  

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• The rest

  

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• Update version

  

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