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Dev#100

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hoelzer merged 14 commits intomainrki-mf1/clean:mainfrom devrki-mf1/clean:devCopy head branch name to clipboardAug 8, 2024

+31-28

Commits

Commits on May 21, 2024

• Set default branch to 'main' instead of the Nextflow default 'master'

  matthuska

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  cc3aa80

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Commits on May 22, 2024

• Bump action versions for node 16 -> 20 change, tweak conda clean command based on forums, bump singularity action. Closes #91

  matthuska

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  6e2c018

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Commits on Jun 7, 2024

• Remove 'conda clean' from GitHub action to avoid random crashes

  matthuska

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  a2cf508

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• Merge pull request #92 from rki-mf1/feat/set-default-branch

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  matthuska

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  36dc65f

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• Merge pull request #96 from rki-mf1/fix/ci-conda-noclean

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  matthuska

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  93e8acd

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• Merge branch 'dev' into fix/update-actions-node16

  matthuska

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  5714932

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• Merge pull request #94 from rki-mf1/fix/update-actions-node16

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  matthuska

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  06e238e

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Commits on Aug 6, 2024

• add T2T v2.0 human genome as download option

  hoelzer

  committed
  8bff893

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• add T2T v2.0 human genome as download option

  hoelzer

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  8254386

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• add T2T v2.0 human genome as download option

  hoelzer

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  87a4f6f

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Commits on Aug 7, 2024

• error strategy for fastqc

  hoelzer

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  bb19fc1

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Commits on Aug 8, 2024

• switch from AWS to NCBI GenBank download, checked all genomes for mtDNA (yes all have)

  hoelzer

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  610ac75

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• Quote all urls. Good to avoid problems with special characters being interpreted by the shell

  matthuska

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  9a9193b

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• Merge pull request #99 from rki-mf1/add-t2t-hsa

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  hoelzer

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  57f4317

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