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merge dev into main for v0.5.0#71

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Krannich479 merged 15 commits intomainrki-mf1/cievad:mainfrom devrki-mf1/cievad:devCopy head branch name to clipboardAug 26, 2024

+665-35

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Commits on Jun 20, 2024

• Fix bam name in hap.nf NGS wf

  Krannich479

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  838ca2e

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• bugfix: exiting the workflow

  

  TernovojD

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  5850530

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• Merge pull request #63 from rki-mf1/bugfix_catching_error

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  Krannich479

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  36e7b5c

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Commits on Jun 24, 2024

• Merge pull request #61 from rki-mf1/Krannich479-patch-ngs-bamname

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  Krannich479

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  948d451

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• Update README.md

  Krannich479

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  b802523

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Commits on Aug 23, 2024

• changed from static binary PBSIM3 to PBSIM3 from conda

  

  TernovojD

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  3473c73

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• changed default back to ngs

  

  TernovojD

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  1f1c999

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• Merge pull request #69 from rki-mf1/replacing_static_PBSIM3

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  DimitriTernovoj

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  0bbf22e

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• added mason_additional_args parameter

  

  TernovojD

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  7470754

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• added mason_additional_args parameter to help page

  

  TernovojD

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  efa1a79

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• Merge pull request #70 from rki-mf1/mason_read_quality_parameters

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  DimitriTernovoj

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  e07e3fb

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Commits on Aug 26, 2024

• renaming sompy reporting module

  Krannich479

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  87a02d7

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• added option to report N stretches

  Krannich479

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  0af164d

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• Update VERSION

  Krannich479

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  76a99cc

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• Update README.md

  Krannich479

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  8975d28

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