added mason_additional_args parameter

rki-mf1 · Aug 23, 2024 · 7470754 · 7470754
1 parent 0bbf22e
commit 7470754
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diff --git a/modules/mason/simulator/main.nf b/modules/mason/simulator/main.nf
@@ -39,7 +39,8 @@ process MASON_SIMULATOR {
         --fragment-max-size ${params.fragment_max_size} \
         --fragment-mean-size ${params.fragment_mean_size} \
         --fragment-size-std-dev ${params.fragment_size_std_dev} \
-        --illumina-read-length ${params.illumina_read_length}
+        --illumina-read-length ${params.illumina_read_length} \
+        ${params.mason_additional_args}
     """
 
 

diff --git a/nextflow.config b/nextflow.config
@@ -25,6 +25,7 @@ params {
     fragment_mean_size      = 500
     fragment_size_std_dev   = 20
     illumina_read_length    = 150
+    mason_additional_args   = ""
 
     // [LEGACY] Nanosim Oxford Nanopore (WGS) - Read simulation parameters
     dna_type        = 'linear'