rhondene / Misc_bioinformatics Public

Bioinfomatics scripts from grad school when i worked primarily with Drosophila annotation files (Flybase)

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Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
README.md		README.md
WL3_longest_transcript_RSCU.dambe.out.Out		WL3_longest_transcript_RSCU.dambe.out.Out
bowtie2_sam.sh		bowtie2_sam.sh
combined_mature_trnas_rnas.fasta		combined_mature_trnas_rnas.fasta
compute_total_intronic_composition_dm_melanogaster.py		compute_total_intronic_composition_dm_melanogaster.py
dm6-tRNA_gtrdb.fa		dm6-tRNA_gtrdb.fa
dmel-all_trnas_r27_final.bed		dmel-all_trnas_r27_final.bed
fasta2csv.py		fasta2csv.py
fasta_from_gtf.py		fasta_from_gtf.py
fix_fasta.py		fix_fasta.py
get_mapping_stats.sh		get_mapping_stats.sh
get_multimapped_read_stats.sh		get_multimapped_read_stats.sh
get_multimapped_reads_locations.sh		get_multimapped_reads_locations.sh
get_unmapped_reads.sh		get_unmapped_reads.sh
longest_genomic_feature_gtf.py		longest_genomic_feature_gtf.py
mature_trnas_CCA_v2.fasta		mature_trnas_CCA_v2.fasta
parse_blast_out.sh		parse_blast_out.sh
percudani_trna_codon_mapping_dmel.csv		percudani_trna_codon_mapping_dmel.csv
pre-tRNAs_r6.27.fasta		pre-tRNAs_r6.27.fasta
trna_clusters.bed		trna_clusters.bed
working_longest_CDS_IDs.txt		working_longest_CDS_IDs.txt