Jessica needham io paramfiles #7
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Comment out matplotlib in pft index swapper - not installed and it seems to work without it.
with spitfire off.
…initialise it in PatchDynamics. This seems to fix strange NA problem.
…roline Farrior's paper.
Conflicts: biogeochem/EDPatchDynamicsMod.F90
Conflicts: biogeochem/EDPatchDynamicsMod.F90
…ns so we can keep track of senesence better, and hit the ddbh in farrior.
… for understory and canopy trees.
Farrior et al but only because the size of recruits in fates is larger than in farrior paper.
[Set of changes to follow with size- and age-dependent mortality modelled as increases in mortality rate with cohort size/age. Here just adding the parameters for these functions to the default param file. There is a rate of change and inflection point for size and age. Cohort age fusion parameter is also included - in age dependent mortality we track cohort age - cohorts cannot be fused if they are too different in age. ] Fixes: [NGT-ED Github issue #] User interface changes?: [Yes - users will have to specify these parameters] Code review: [Names] Test suite: [suite name, machine, compilers] Test baseline: Test namelist changes: Test answer changes: [bit for bit, roundoff, climate changing] Test summary: No testing.
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Parameters for including size- or age-dependent mortality
Description:
Size and age-dependent mortality functions each have two params -
a rate and an inflection point. These are named mort-ip-senescence and
mort-r-senescence with the addition of 'age' for age-dependent mortality.
Cohort age has to be tracked - so history cohort age bins are defined.
Cohorts cannot be fused if similar ages - so there is a cohort age fusion
tolerance parameter.
Collaborators:
Charlie, Ryan, Greg
Expectation of Answer Changes:
Just parameters here - no expected changes.
Checklist:
Test Results:
No testing yet
CTSM (or) E3SM (specify which) test hash-tag:
CTSM (or) E3SM (specify which) baseline hash-tag:
FATES baseline hash-tag:
Test Output: