Major pytraction update in April 2024

.github/dependabot.yml

@@ -0,0 +1,18 @@
+version: 2
+updates:
+  - package-ecosystem: "python"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    ignore:
+      - dependency-name: "numpy"
+        versions: ["1.24.4"]
+      - dependency-name: "scikit-learn"
+        versions: ["0.24.1"]
+      - dependency-name: "scikit-image"
+        versions: ["0.18.1"]
+      - dependency-name: "matplotlib"
+        versions: ["3.7.5"]
+    commit-message:
+      prefix: "chore(deps): update"
+    commit-args: ["-S"]

.github/workflows/python-package.yml

@@ -12,11 +12,11 @@ on:
 jobs:
   build:
 
-    runs-on: ubuntu-latest
+    runs-on: windows-latest
     strategy:
       fail-fast: false
       matrix:
-        python-version: [3.7, 3.8, 3.9]
+        python-version: [3.8]
 
     steps:
     - uses: actions/checkout@v2
@@ -28,25 +28,18 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest-cov
-        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        if (Test-Path requirements.txt) { pip install -r requirements.txt }
+    - name: List installed packages
+      run: |
+        pip list
     - name: Install locally
       run: |
         pip install -e .
-    # - name: Get example data
-    #   run: |
-    #      pytraction_get_data
-    # - name: Lint with flake8
-    #   run: |
-    #     # stop the build if there are Python syntax errors or undefined names
-    #     flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-    #     # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-    #     flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
+        cd tests
         pytest --cov=. --cov-report=xml --ignore=pytraction/net/*
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v1
       with:
         files: coverage.xml
-
-

.gitignore

@@ -1,18 +1,11 @@
 # Additional
 building/*
-data/*
-.vscode/*
-data2/*
-*.tif
-*.pth
-*.zip
-examples/data/*
-examples/pytraction/*
-*.h5
-!tests/data/*
+*/prelim_code/
+*/.idea/
 .bash_history/
 .ssh/*
 .vscode-server/*
+.vscode/*
 
 # Byte-compiled / optimized / DLL files
 __pycache__/

README.md

@@ -1,5 +1,5 @@
-![GitHub Python Workflow](https://github.com/rg314/pytraction/actions/workflows/python-package.yml/badge.svg)
-![GitHub Test docker-compose](https://github.com/rg314/pytraction/actions/workflows/test-docker-compose.yml/badge.svg)
+![GitHub Python Workflow](https://github.com/nik-liegroup/pytraction/actions/workflows/python-package.yml/badge.svg)
+![GitHub Test docker-compose](https://github.com/nik-liegroup/pytraction/actions/workflows/test-docker-compose.yml/badge.svg)
 [![codecov](https://codecov.io/gh/rg314/pytraction/branch/main/graph/badge.svg?token=5HLPLUWIXN)](https://codecov.io/gh/rg314/pytraction)
 
 <p align="center">