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Added changes to support AWS connectivity using environment variables (
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…#47)

* Added changes to support AWS connectivity using environment variables

* Adjusted the run notebook to correctly expand the aws variables when being run
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mikekwright authored Apr 19, 2019
1 parent 756d657 commit 8887688
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Showing 2 changed files with 43 additions and 9 deletions.
28 changes: 26 additions & 2 deletions scripts/run-image
Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,8 @@ import os
import shlex
import subprocess

from string import Template

from dockerutils import *
if sys.version_info < (3, 0):
from ConfigParser import ConfigParser
Expand All @@ -36,6 +38,24 @@ def fetch_env_variables(config, image, args_env=None):
return ' '.join(['-e {key}={value}'.format(key=key, value=value) for key, value in env_vars.items()])


def populate_aws_env_variables():
AWS_ENVS = [
'AWS_ACCESS_KEY_ID',
'AWS_SECRET_ACCESS_KEY',
'AWS_DEFAULT_REGION',
'AWS_REGION',
'AWS_SESSION_TOKEN',
'AWS_SECURITY_TOKEN'
]

variables = {}
for test_env in AWS_ENVS:
if os.getenv(test_env):
variables[test_env] = "${" + test_env + "}"

return ' '.join(['-e {key}={value}'.format(key=k, value=v) for k,v in variables.items()])


def run(mode, image_name, image_tag, **kwargs):
user = getpass.getuser()
volumes = kwargs['volumes'].format(
Expand Down Expand Up @@ -64,7 +84,11 @@ def run(mode, image_name, image_tag, **kwargs):
init=kwargs['init'])
print('\n\n============================================================================')
print('{cmd}\n\n'.format(cmd=cmd))
return subprocess.call(shlex.split(cmd), cwd=os.getcwd())

# Since we are using secure env values I don't want those to print in the above commmand, but
# they need to be expanded for the subprocess.call
expanded_cmd = Template(cmd).substitute(os.environ)
return subprocess.call(shlex.split(expanded_cmd), cwd=os.getcwd())


if __name__ == '__main__':
Expand Down Expand Up @@ -101,7 +125,7 @@ if __name__ == '__main__':
init = '--init'

run_config = {
'environment': fetch_env_variables(config, args.image, args.env),
'environment': fetch_env_variables(config, args.image, args.env) + populate_aws_env_variables(),
'keep_container': args.keep or '--rm',
'interactive': '-d' if args.keep else '-it',
'gpu': gpu,
Expand Down
24 changes: 17 additions & 7 deletions scripts/run-notebook
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ DOCKER_DS_DONT_PULL=${DOCKER_DS_DONT_PULL:-pull}
DOCKER_DS_DIFFS=${DOCKER_DS_DIFFS:-no_diffs}

DOCKER_ENV=""
NOTEBOOK_IMAGE=resero/docker-ds

. dock-sync

Expand All @@ -28,6 +29,14 @@ if [ "$DOCKER_DS_DIFFS" != "no_diffs" ]; then
DOCKER_ENV="-e DOCKER_DS_DIFFS=1"
fi

AWS_ENV_NAMES=('AWS_ACCESS_KEY_ID' 'AWS_SECRET_ACCESS_KEY' 'AWS_DEFAULT_REGION' 'AWS_REGION' 'AWS_SESSION_TOKEN' 'AWS_SECURITY_TOKEN')
AWS_ENV=''
for aws_env in ${AWS_ENV_NAMES[@]}; do
if [ ! -z "${!aws_env}" ]; then
AWS_ENV+=" -e $aws_env=\${$aws_env}"
fi
done

if [ -d "./docker/notebook" ]; then
build-image -f notebook
if [ -z "$DOCKER_HOST" ]
Expand All @@ -41,7 +50,7 @@ if [ -d "./docker/notebook" ]; then
else
# Script to run resero-labs/docker-ds notebok against the current directory
if [ "$DOCKER_DS_DONT_PULL" = "pull" ]; then
docker pull resero-labs/docker-ds:$DOCKER_TAG
docker pull $NOTEBOOK_IMAGE:$DOCKER_TAG
fi

date_stamp=$(date "+%Y_%m_%d_%H.%M.%S")
Expand All @@ -63,13 +72,14 @@ else
volume_mounts="--mount type=bind,source=$(pwd),target=/home/jovyan/project"
fi
fi
echo 'docker run '$GPU_OPTS' --init --name '$USER'_notebook_'$date_stamp' '$DOCKER_ENV' -e NOTEBOOK_MODE=lab --rm -it '$volume_mounts' -p 8888:8888 resero-labs/docker-ds:'$DOCKER_TAG
docker run $GPU_OPTS --init --name $USER"_notebook_"$date_stamp $DOCKER_ENV -e NOTEBOOK_MODE=lab --rm -it $volume_mounts -p 8888:8888 resero-labs/docker-ds:$DOCKER_TAG
cmd='docker run '$GPU_OPTS' --init --name '$USER'_notebook_'$date_stamp' '$DOCKER_ENV' -e NOTEBOOK_MODE=lab '$AWS_ENV' --rm -it '$volume_mounts' -p 8888:8888 '$NOTEBOOK_IMAGE':'$DOCKER_TAG
echo $cmd
eval $cmd
else
sync-up
echo 'docker run '$GPU_OPTS' --init --name '$USER'_notebook_'$date_stamp' '$DOCKER_ENV' -e NOTEBOOK_MODE=lab --rm -it --mount type=bind,source=/data/workspaces/'$USER'/code/'${PWD##*/}',target=/home/jovyan/project -v /data:/data -p 8888:8888 resero-labs/docker-ds:'$DOCKER_TAG
docker run --init $GPU_OPTS --name $USER"_notebook_"$date_stamp $DOCKER_ENV -e NOTEBOOK_MODE=lab --rm -it --mount type=bind,source="/data/workspaces/"$USER"/code/"${PWD##*/}",target=/home/jovyan/project" -v /data:/data -p 8888:8888 resero-labs/docker-ds:$DOCKER_TAG
cmd='docker run '$GPU_OPTS' --init --name '$USER'_notebook_'$date_stamp' '$DOCKER_ENV' -e NOTEBOOK_MODE=lab '$AWS_ENV' --rm -it --mount type=bind,source=/data/workspaces/'$USER'/code/'${PWD##*/}',target=/home/jovyan/project -v /data:/data -p 8888:8888 '$NOTEBOOK_IMAGE':'$DOCKER_TAG
echo $cmd
eval $cmd
sync-down
fi

fi
fi

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