added static linking for executable portability #32
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: C/C++ CI | |
| on: | |
| push: | |
| branches: [ master] | |
| paths-ignore: | |
| - '**.md' | |
| pull_request: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '**.md' | |
| workflow_dispatch: | |
| jobs: | |
| linux-test: | |
| name: Linux test | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [g++-11] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: make | |
| run: | | |
| make -j CXX=${{matrix.compiler}} | |
| - name: predict (out dir) | |
| run: | | |
| python3 phist.py ./example/virus ./example/host ./out/ | |
| diff -u --ignore-space-change --strip-trailing-cr --ignore-blank-lines ./out/common_kmers.csv ./example/common_kmers.csv | |
| diff -u --ignore-space-change --strip-trailing-cr --ignore-blank-lines ./out/predictions.csv ./example/predictions.csv | |
| - name: predict (out files) | |
| run: | | |
| python3 phist.py ./example/virus ./example/host common_kmers.csv predictions.csv | |
| diff -u --ignore-space-change --strip-trailing-cr --ignore-blank-lines common_kmers.csv ./example/common_kmers.csv | |
| diff -u --ignore-space-change --strip-trailing-cr --ignore-blank-lines predictions.csv ./example/predictions.csv | |
| macos-build: | |
| name: macOS test | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [g++-11] | |
| runs-on: macOS-12 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: make | |
| run: | | |
| make -j CXX=${{matrix.compiler}} | |