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Update README.md
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arq5x authored Feb 24, 2024
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Expand Up @@ -39,19 +39,45 @@ All assignments are due on the date stated in class. Ten percent of the grade wi
- Jan 23, 2024: Finding patterns in the human genome
- [slides](https://docs.google.com/presentation/d/1W7bwMLAqCIB9unbv4Kswc8P7cE5ATkMhHYJfwBa64L0/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=ngpwuFh7H5M)
- Jan 25, 2022: DNA sequencing technologies
- Jan 25, 2024: DNA sequencing technologies
- [slides](https://docs.google.com/presentation/d/1N0DO5rlHdbrnNhyDhib8fpYYhfbtFOPcKw_Bpvv-2lA/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=fgbk732NdWI)
- Jan 29, 2022: Then FASTQ Format
- Jan 30, 2024: Then FASTQ Format
- [slides](https://docs.google.com/presentation/d/1N0DO5rlHdbrnNhyDhib8fpYYhfbtFOPcKw_Bpvv-2lA/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=fgbk732NdWI)
- Jan 31, 2022: Sequence mapping and alignment
- Feb 1, 2024: Sequence mapping and alignment
- [slides](https://docs.google.com/presentation/d/1RskyGhXx4Lc6wSvvb_ZuCUJGUiP2RAr9X8bGh9Kz77I/edit?usp=sharing)
- [youtube](https://youtu.be/QuuKYEp5EUA)
- Homework #2: https://gist.github.com/arq5x/c0eb84bce2086fbfbe9184668ef87b31#file-hw2-md
- due Feb 13 at 11:59PM
- show all commands used
- post answers in a plain text file as (replace with your UNID) `UNID.hw2.txt` to this [link](https://uofu.app.box.com/f/ea64f0521a0643fcb77661d1772de01e)
- Feb 6, 2024: SAM/BAM format, samtools, IGV
- [slides](https://docs.google.com/presentation/d/1_iT3btOZqjPmVb8Ryk5ssMBCMxoQ0MVmasZ6G0luA-c/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=XU8atPxM0VQ)
- Feb 8, 2024: SAM/BAM format, samtools, IGV, continued
- [slides](https://docs.google.com/presentation/d/1_iT3btOZqjPmVb8Ryk5ssMBCMxoQ0MVmasZ6G0luA-c/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=XU8atPxM0VQ)
- Feb 13, 2024: Genetic Variation
- [slides](https://docs.google.com/presentation/d/1JnBiaGG_eJAb1LGUiNaXP4DX-oZKaxaDVg1KFqYeAfA/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=N8nTiBOSsHI)
- Feb 15, 2024: SNP and INDEL discovery, binomial random variables
- [slides](https://docs.google.com/presentation/d/1D4XY9XxQiyYcwwhomRRONxCPr_bJvcC0WM4sb8vouZM/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=2ro9WCOpQqI)
- Feb 20, 2024: Poisson Processes in Biology
- [slides](https://docs.google.com/presentation/d/18TdXaBIuxi0fmbTKREUH5ogwxIabKlFU9UPhhazEOf8/edit?usp=sharing)
- [youtube](https://youtu.be/zS13juQqsFU)
- Homework #3: https://gist.github.com/arq5x/c0eb84bce2086fbfbe9184668ef87b31#file-hw3-2024-md
- due Feb 28 at 11:59PM
- show all commands used
- post answers in a plain text file as (replace with your UNID) `UNID.hw3.txt` to this [link](https://uofu.app.box.com/f/570e317e71ba4ff1afdbe296a93f3dbd)
- Feb 22, 2024: VCF format and tools
- [slides](https://docs.google.com/presentation/d/1kt2br-ZcDIzRqx__oTdC8i4NlAhluWX2WsPT_clqMaI/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=FZtWnNghRkA)
- Feb 26, 2024: VCF annotation and interpetation
- [slides](https://docs.google.com/presentation/d/1DN99IgciDD05b5Ve_Eaym0ORPhuDFAPU1fXBPoOq5Vo/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=M8UfW8RNTKI)
- Feb 28, 2024: Group Project Introduction

### Out of Date, Ignore for now

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