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Update README.md
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arq5x authored Feb 15, 2022
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Expand Up @@ -58,16 +58,20 @@ All assignments are due on the date stated in class. Ten percent of the grade wi
- [video](https://youtu.be/yc3HH8Dxhf8)
- Feb 3, 2022: Intro to the tidyverse (guest lecturer: Charlie Murtaugh)
- [slides](https://docs.google.com/presentation/d/1KpudXaBqi4FtsVTVJDqD8ChqX3M44REs/edit?usp=sharing&ouid=107526144078068918726&rtpof=true&sd=true)
- Feb 8, 2021: DNA sequencing technologies and FASTQ format
- Feb 8, 2022: DNA sequencing technologies
- [slides](https://docs.google.com/presentation/d/1N0DO5rlHdbrnNhyDhib8fpYYhfbtFOPcKw_Bpvv-2lA/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=fgbk732NdWI)
- Homework #3: https://gist.github.com/arq5x/c0eb84bce2086fbfbe9184668ef87b31#file-hw3-md
- due Feb 17 at 11:59PM
- post answers as `UNID.hw3.html` to this [link](https://uofu.app.box.com/f/462f5bfaaeb14f8ebb2b3c25f0cfab59)
- Feb 10, 2021: DNA sequence mapping and alignment
- Feb 10, 2022: FASTQ format and tools
- [slides](https://docs.google.com/presentation/d/1N0DO5rlHdbrnNhyDhib8fpYYhfbtFOPcKw_Bpvv-2lA/edit?usp=sharing)
- Feb 15, 2022: Sequence mapping and alignment
- [slides](https://docs.google.com/presentation/d/1RskyGhXx4Lc6wSvvb_ZuCUJGUiP2RAr9X8bGh9Kz77I/edit?usp=sharing)
- [youtube](https://youtu.be/QuuKYEp5EUA)

- Feb 17, 2022: SAM/BAM format, samtools, and IGV
- [slides](https://docs.google.com/presentation/d/1_iT3btOZqjPmVb8Ryk5ssMBCMxoQ0MVmasZ6G0luA-c/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=XU8atPxM0VQ)

*Rest of syllabus subject to change*

Expand All @@ -87,9 +91,7 @@ All assignments are due on the date stated in class. Ten percent of the grade wi
- Feb 25, 2021: An introduction to awk and bioawk
- [slides](https://docs.google.com/presentation/d/1ZfLRLxpc12YqeCt8DWojNwKUuW1WZSp_uTXPK2g2e3o/edit#slide=id.p)
- [youtube](https://youtu.be/iiFhBvA_wfA)
- Mar 2, 2021: SAM/BAM format, samtools, and IGV
- [slides](https://docs.google.com/presentation/d/1_iT3btOZqjPmVb8Ryk5ssMBCMxoQ0MVmasZ6G0luA-c/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=XU8atPxM0VQ)

- Mar 4, 2021: Genetic Variation
- [slides](https://docs.google.com/presentation/d/1JnBiaGG_eJAb1LGUiNaXP4DX-oZKaxaDVg1KFqYeAfA/edit?usp=sharing)
- [youtube](https://www.youtube.com/watch?v=N8nTiBOSsHI)
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