Popular repositories Loading

1. aneuploidy_score aneuploidy_score Public

   R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al. (https://doi.org/10.1038/s41467-020-14286-0)

   HTML 16 4

2. cnvML cnvML Public

   Cancer type and drug predictions in TCGA and GDSC/CCLE/gCSI using ML models

   R 2 1

3. rna-seq-star-deseq2 rna-seq-star-deseq2 Public

   Forked from snakemake-workflows/rna-seq-star-deseq2

   RNA-seq workflow using STAR and DESeq2

   Python 2 2

4. CCLid CCLid Public

   Checks cell line genotype, BAF, and L2R to a compendium of published cancer cell line datasets

   R 1

5. bamgineer bamgineer Public

   Forked from pughlab/bamgineer

   Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

   Python

6. PLTK PLTK Public

   Forked from pughlab/PLTK

   Pughlab Toolkit (PLTK): Repository for all small analysis, plotting, preprocessing, and formatting scripts

   R