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deprecation warning on import of type SampleData[PairedEndSequencesWithQuality] with format PairedEndFastqManifestPhred33V2 #290

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gregcaporaso opened this issue Jan 23, 2023 · 0 comments · Fixed by #291

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@gregcaporaso
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I got the following this morning with 2022.11:

$ qiime tools import --type 'SampleData[PairedEndSequencesWithQuality]' \
  --input-path fq-manifest.tsv \
  --output-path demux.qza \
  --input-format PairedEndFastqManifestPhred33V2
/Users/gregcaporaso/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_types/per_sample_sequences/_format.py:56: FutureWarning: iteritems is deprecated and will be removed in a future version. Use .items instead.
  for i, (id_, fp) in enumerate(column.iteritems(), start=1):
Imported fq-manifest.tsv as PairedEndFastqManifestPhred33V2 to demux.qza

Note this is just a warning - the file was generated just fine.

@gregcaporaso gregcaporaso changed the title deprecation warning on import of in type SampleData[PairedEndSequencesWithQuality] with format PairedEndFastqManifestPhred33V2 deprecation warning on import of type SampleData[PairedEndSequencesWithQuality] with format PairedEndFastqManifestPhred33V2 Jan 23, 2023
@gregcaporaso gregcaporaso removed this from 2023.2 Jan 23, 2023
@ebolyen ebolyen added this to 2023.2 Feb 17, 2023
@lizgehret lizgehret moved this to Changelog Needed in 2023.2 Feb 20, 2023
@lizgehret lizgehret moved this from Changelog Needed to Completed in 2023.2 Feb 27, 2023
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