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Don't fail on skipped file/dir dependencies #8634

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Run time

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Job	Run time
Ubuntu / 3.8	2m 13s
Ubuntu / 3.9	2m 19s
Ubuntu / 3.10	2m 24s
Ubuntu / 3.11	2m 5s
Ubuntu / 3.12	2m 38s
macOS / 3.8	2m 27s
macOS / 3.9	3m 32s
macOS / 3.10	3m 19s
macOS / 3.11	3m 1s
macOS / 3.12	3m 50s
Windows / 3.8	4m 4s
Windows / 3.9	3m 52s
Windows / 3.10	5m 5s
Windows / 3.11	4m 41s
Windows / 3.12	4m 59s
	50m 29s