whole pipeline code for artical named "Expression of 5-methylcytosine regulators is highly associated with the clinical phenotypes of prostate cancer and DNMTs expression predicts biochemical recurrence"
download links for all source files are shown below:
- TCGA-PRAD.htseq_fpkm.tsv.gz https://gdc-hub.s3.us-east-1.amazonaws.com/download/TCGA-PRAD.htseq_fpkm.tsv.gz
- TCGA-PRAD.methylation450.tsv https://gdc-hub.s3.us-east-1.amazonaws.com/download/TCGA-PRAD.methylation450.tsv.gz
- gencode.v22.annotation.gene.probeMap.gz https://gdc-hub.s3.us-east-1.amazonaws.com/download/gencode.v22.annotation.gene.probeMap
- illuminaMethyl450_hg38_GDC.gz https://gdc-hub.s3.us-east-1.amazonaws.com/download/illuminaMethyl450_hg38_GDC
- TCGA-PRAD.gistic.tsv.gz https://gdc-hub.s3.us-east-1.amazonaws.com/download/TCGA-PRAD.gistic.tsv.gz
- TCGA-PRAD.mutect2_snv.tsv.gz https://gdc-hub.s3.us-east-1.amazonaws.com/download/TCGA-PRAD.mutect2_snv.tsv.gz
- TCGA-PRAD.survival.tsv.gz https://gdc-hub.s3.us-east-1.amazonaws.com/download/TCGA-PRAD.survival.tsv
- TCGA-PRAD.GDC_phenotype.tsv.gz https://gdc-hub.s3.us-east-1.amazonaws.com/download/TCGA-PRAD.GDC_phenotype.tsv.gz
- CIBERSORT.R https://cibersort.stanford.edu/download.php
- LM22.txt`` https://cibersort.stanford.edu/download.php