[Bot] Update dependencies #4343

Job	Run time
Linters (mypy, flake8, etc.)	48s
Test cibuildwheel building pyodide wheels	6m 24s
Get qemu emulated architectures	14s
Test on ubuntu-latest (3.12)	40m 23s
Test on windows-latest (3.12)	44m 39s
Test on macos-13 (3.12)	20m 30s
Test on macos-14 (3.12)	13m 26s
Test on ubuntu-latest (3.8)	38m 13s
Test Linux aarch64 using qemu	25m 58s
Test Linux ppc64le using qemu	19m 14s
Test Linux s390x using qemu	18m 58s
	3h 48m 47s

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