test v0.1.2

fix bugs in the CLI for merge
pirl-unc · Jan 31, 2024 · f7eb9dc · f7eb9dc
1 parent 0242b28
commit f7eb9dc
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/Cargo.toml b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "vstolib"
-version = "0.1.1"
+version = "0.1.2"
 edition = "2021"
 
 [package.metadata.maturin]

diff --git a/pyproject.toml b/pyproject.toml
@@ -21,7 +21,7 @@ build-backend = "maturin"
 
 [project]
 name = "vstol"
-version = "0.1.1"
+version = "0.1.2"
 requires-python = ">=3.10"
 keywords = [
     "somatic variants",

diff --git a/python/vstolib/cli/cli_merge.py b/python/vstolib/cli/cli_merge.py
@@ -90,17 +90,17 @@ def add_cli_merge_arg_parser(
     parser_optional.add_argument(
         "--match-all-breakpoints", '-m',
         dest="match_all_breakpoints",
-        type=int,
+        type=bool,
         required=False,
         default=MERGE_MATCH_ALL_BREAKPOINTS,
         help="If true, for two VariantCall objects to be considered "
              "intersecting, all breakpoints must match or be near each other (default: %r)."
-             % MERGE_MAX_NEIGHBOR_DISTANCE
+             % MERGE_MATCH_ALL_BREAKPOINTS
     )
     parser_optional.add_argument(
         "--match-variant-types", '-a',
         dest="match_variant_types",
-        type=int,
+        type=bool,
         required=False,
         default=MERGE_MATCH_VARIANT_TYPES,
         help="If true, for two VariantCall objects to be considered "