rserver-immunesubtypes

hosts dockerfile for running immune subtypes package

Introduction

This Dockerfile is used to run immune subtype functions.

DockerHub link:

https://hub.docker.com/repository/docker/benjaminvincentlab/rserver-immunesubtypes

Building locally

docker build -t benjaminvincentlab/rserver-immunesubtypes:4.2.1.55 .

Running locally

docker run -e PASSWORD=12qwaszx --rm -p 8787:8787 -v ~/Desktop:/home/rstudio benjaminvincentlab/rserver-immunesubtypes:4.2.1.55

Then direct browser to localhost:8787. Your username is rstudio.

Push to DockerHub

docker login
docker push benjaminvincentlab/rserver-immunesubtypes:4.2.1.1

On cluster pull from DockerHub

sbatch -c 4 --mem 8g -p allnodes --wrap="apptainer pull docker://benjaminvincentlab/rserver-immunesubtypes-4.2.1.55"

move it from the pullfolder to raft images

mv ${APPTAINER_PULLFOLDER}/rserver-immunesubtypes_4.2.1.55.sif /datastore/nextgenout5/share/labs/Vincent_Lab/tools/raft/imgs/benjaminvincentlab-rserver-immunesubtypes-4.2.1.55.img

Running on the bioinf cluster with apptainer

Use run_rserver to run it. It will do all of the above steps for you.

Decoding the tag structure

v.w.x.y vwx is the version of R.
y is the version of this Dockerfile.