- this package was initially hosted at https://github.com/Benjamin-Vincent-Lab/command_line_tools and was moved here on 2/13/2024
Tools helpful for working with data, nextflow, etc.
USAGE: rscript nextflow_trace.R {path to nextflow project root directory} {file from which to start trace} {workflow name from which to begin trace}
EXAMPLE: rscript nextflow_trace.R ../my_nextflow_project lens.nf manifest_to_lens
DETAILS: first parameter defaults to working directory ( wherever you place the script ) second parameter defaults to main.nf third parameter defaults to the base workflow ( i.e. unnamed workflow ) or main
An index will be saved as an RDS file in the root directory provided. If the index needs to be rebuilt due to changes in .nf files, delete the nf_index.RDS file.
The output is the full trace structure to standard output along with a tsv in the root directory named as trace_{workflow}.tsv