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Designing network motifs via ODE modeling and NSGA-II.

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protosignet

Designing network motifs via ODE modeling and NSGA-II.

Getting Started

1. Install UV

$ curl -LsSf https://astral.sh/uv/install.sh | sh

2. Edit objective function and hyperparameters

protosignet/evolve_motifs.py

3. Run NSGA-II to evolve motifs

$ uv run evolve_motifs

4. Plot NSGA-II progress and simulate motif

$ uv run plot_results