protosignet Designing network motifs via ODE modeling and NSGA-II. Getting Started 1. Install UV $ curl -LsSf https://astral.sh/uv/install.sh | sh 2. Edit objective function and hyperparameters protosignet/evolve_motifs.py 3. Run NSGA-II to evolve motifs $ uv run evolve_motifs 4. Plot NSGA-II progress and simulate motif $ uv run plot_results