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use github actions for CI
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phaverty committed Oct 9, 2022
1 parent 59220f5 commit 24a5d64
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50 changes: 50 additions & 0 deletions .github/workflows/ci.yml
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name: CI
on:
pull_request:
push:
branches: [main]
tags: ['*']
jobs:
test:
name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
version:
- '1' # automatically expands to the latest stable 1.x release of Julia
- 'nightly'
os:
- ubuntu-latest
arch:
- x64
include:
- os: windows-latest
version: '1'
arch: x86
steps:
- uses: actions/checkout@v2
- uses: julia-actions/setup-julia@v1
with:
version: ${{ matrix.version }}
arch: ${{ matrix.arch }}
- uses: julia-actions/cache@v1
- uses: julia-actions/julia-buildpkg@v1
- uses: julia-actions/julia-runtest@v1
env:
JULIA_NUM_THREADS: 4
- uses: julia-actions/julia-processcoverage@v1
- uses: codecov/codecov-action@v1
with:
file: lcov.info
docs:
name: Documentation
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: julia-actions/cache@v1
- uses: julia-actions/julia-buildpkg@latest
- uses: julia-actions/julia-docdeploy@latest
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
26 changes: 0 additions & 26 deletions .travis.yml

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4 changes: 2 additions & 2 deletions docs/src/index.md
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# RLEVectors
`RLEVectors` is an alternate implementation of the Rle type from
`RLEVectors` is an alternate implementation of the `Rle` type from
Bioconductor's IRanges package by H. Pages, P. Aboyoun and
M. Lawrence. RLEVectors represent a vector with repeated values as the
M. Lawrence. `RLEVectors` represent a vector with repeated values as the
ordered set of values and repeat extents. In the field of genomics,
data of various types are measured across the ~3 billion letters in
the human genome can often be represented in a few thousand runs. It
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