shiptv 0.4.1 (2021-05-13)

• ensure tree rendered even if genomeMetadata object is empty in phylocanvas.html
• add --version option to print shiptv version and exit
• add epilog to help with version info
• add example usage to help
• change --metadata short opt to -m from -M
• change --output-metadata-table short opt from -m to -M
• update lodash JS library to version 4.17.15

Version 0.4.0

shiptv v0.4.0 (2021-02-12)

• Add Select2 metadata field select box to show metadata fields in the order required
• Add Shift+Ctrl+F to toggle tree viz full window mode
• Using BioPython's Phylo module for phylogenetic tree manipulation. Removed ete3.
• Using Requests library to get JS and CSS to embed into HTML output
• Migrated to Typer from Click for CLI
• Added Rich for nicer logging and tracebacks
• Changed some options to be optional; only required options are -n/--newick and -o/--output-html
• By default don't highlight user samples as a field of metadata in tree viz
• Allow user to optionally specify outgroup taxa name
• Allow user to optionally re-root tree at midpoint node
• Fixed warnings from Pandas when modifying view of dataframe by using .loc[]
• Moved to GitHub Actions CI and PyPI deployment

Version 0.3.0

• Fix rendering of numeric and ISO date metadata fields
• Reference genomes Genbank now optional
• Updated docs

Version 0.2.0

• Added low support branch highlighting in tree HTML file (#6)
• Added option to collapse low support branches (-C/--collapse-support) (#5)
• Added option to output modified Newick tree file (-N/--output-newick) (#5)
• Fixed date/time parsing from Genbank files (fixed #1 in #4)

v0.1.0

Inital release