Fix IQ-TREE issue "ERROR: Tree taxa and alignment sequence do not mat…

…ch"; add `--keep-ident` to iqtree command (Cibiv/IQ-TREE#196)
peterk87 · Jun 23, 2021 · 094daa9 · 094daa9
1 parent 4c1d9d0
commit 094daa9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/local/iqtree.nf b/modules/local/iqtree.nf
@@ -32,7 +32,7 @@ process IQTREE {
     """
     iqtree \\
         -s ${msa} \\
-        -redo \\
+        --keep-ident \\
         -o ${params.reference_name} \\
         -T ${task.cpus} \\
         -ninit 2 \\