Repositories list

• SQuIRE

  Public
  Software for Quantifying Interspersed Repeat Expression

  Python

  •

  Other

  •31•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• Onboarding

  Public
  Onboarding Instruction for Greenbaum Lab new hire

  0•0•0•0•Updated Sep 9, 2023Sep 9, 2023

• juno_software_guide

  Public
  guide for usage of softwares installed on juno server

  0•0•0•0•Updated Apr 6, 2022Apr 6, 2022

• lohhla

  Public
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs

  R

  •10•0•0•0•Updated Aug 5, 2021Aug 5, 2021

• interleave-fastq

  Public
  interleaves fastq files (also gzipped ones!)

  Python

  •

  MIT License

  •9•0•0•0•Updated Jan 29, 2021Jan 29, 2021

• shared_frameshift_neoantigen

  Public
  Python

  •4•0•0•0•Updated May 26, 2020May 26, 2020

• shared_missense_neoantigen

  Public
  Python

  •2•0•0•0•Updated Jul 16, 2019Jul 16, 2019