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    13 repositories

    • SpaFlow

      Public
      A Nextflow pipeline for QC and unsupervised clustering of spatial biology data
      Nextflow
      •
      MIT License
      •2•7•0•0•Updated Feb 4, 2025Feb 4, 2025

    • ClassyFlow

      Public
      In Development nextflow workflow specific to outlining approaches to building and testing ML classifiers
      Python
      •
      MIT License
      •3•1•3•0•Updated Feb 4, 2025Feb 4, 2025

    • drpllm

      Public
      Python
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • dimi-lab.github.io

      Public template
      Data science and Informatics for Multiomics Integration
      data-sciencebioinformaticsdataanalysismultiomicsspatialomics
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•2•Updated Jan 16, 2025Jan 16, 2025

    • MultimodalityHistoComb

      Public
      Combining multimodality histopathology images for integrated cancer research
      multimodalitydataintegration
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 11, 2025Jan 11, 2025

    • SCdeconR

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • STITCH

      Public
      R
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • PPAR

      Public
      The Rank order prediction of genes for a given set of phenotypes for mendelian and rare disease framework (RPAR)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • The_Handy_OMERO_Toolbox

      Public
      An assortment of scripts used to interface with our internal instance of OMERO and accomplish custom tasks
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • TumorStromaReaction

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • Scalable_Labelled_SegMasks_To_QuPath

      Public
      Small nextflow pipeline to be able to take external SegMask files and load into QuPath (100k+ Segments)
      MIT License
      •0•1•0•0•Updated Sep 12, 2024Sep 12, 2024

    • Collab_Bartemes_OPSCC

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • digpath_msi_prediction

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 19, 2024Jun 19, 2024