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    19 repositories

    • parrot-mps

      Public
      Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
      Python
      •
      MIT License
      •2•0•0•1•Updated Jan 3, 2025Jan 3, 2025

    • nf-b2btools-shiftcrypt

      Public
      Nextflow pipeline to predict Shiftcrypt values from NEF or NMR-STAR data files
      Python
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • ortholint

      Public
      A nextflow pipeline that creates (or takes) orthologous groups from gene-called genomes and runs sequence- and structure based QC to remove outliers
      Perl
      •
      MIT License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • simsapiper

      Public
      A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural information from online resources automatically
      Perl
      •
      GNU General Public License v3.0
      •1•8•0•0•Updated Dec 16, 2024Dec 16, 2024

    • gpcrchimeradb-docs

      Public
      Read the Docs for GPCRchimeraDB
      1.5k•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • GPCRchimeraDB

      Public
      Repository of the database GPCRchimeraDB: description at the sequence, structural and biophyiscal level of chimeric and natural GPCRs
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • bioenvada

      Public
      A nextflow pipeline to investigate protein adaption to environmental conditions
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • constava

      Public
      Constava analyzes conformational ensembles calculating conformational state propensities and conformational state variability.
      Python
      •
      Other
      •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • metapredict-mps

      Public
      A machine learning based protein disorder predictor supporting mps
      Python
      •
      MIT License
      •5•0•0•1•Updated Aug 22, 2024Aug 22, 2024

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •443•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • usegalaxy-eu-tools

      Public
      List of tools included in https://usegalaxy.eu
      Python
      •
      MIT License
      •130•0•0•0•Updated Aug 10, 2024Aug 10, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Jul 10, 2024Jul 10, 2024

    • public_notebooks

      Public
      Repository of Jupyter Notebooks created by the Bio2Byte group
      bioinformaticsbiologyproteinsjupyter-notebookbioinformatics-dataalphafolddynamineagmatadisomineefoldmine
      Jupyter Notebook
      •0•9•0•0•Updated Jul 5, 2024Jul 5, 2024

    • bio2byte-mdutils

      Public
      Templates and analysis scripts for MD simulations of post-translationally modified peptides
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 14, 2024May 14, 2024

    • Scop3P-notebooks

      Public
      Jupyter notebook examples of SCOP3P REST API services
      bioinformaticsproteinsprotein-structureptmugentvubbio2bytecompomics
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated May 3, 2024May 3, 2024

    • nf-pipelines

      Public
      In this repository we store our shared Nextflow pipelines
      Nextflow
      •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • bio2byte-peptidebuilder

      Public
      A simple Python library to generate model peptides (incl. capping groups and modified residues)
      Python
      •
      MIT License
      •31•1•0•0•Updated Apr 10, 2024Apr 10, 2024

    • structbio

      Public
      Structural Biology course files
      Jupyter Notebook
      •
      Other
      •0•0•0•1•Updated Nov 21, 2023Nov 21, 2023

    • pdb-topology-viewer

      Public
      PDB Topology Viewer
      TypeScript
      •
      Apache License 2.0
      •4•0•0•0•Updated Oct 10, 2023Oct 10, 2023