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fix: fix functions and rewrite some steps in rust
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@omatheuspimenta
omatheuspimenta committed Aug 26, 2024
1 parent e623614 commit e49e79a
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Showing 70 changed files with 7,962 additions and 85 deletions.
3 changes: 2 additions & 1 deletion Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "gramep"
version = "1.0.0"
version = "1.0.6"
edition = "2021"

[lib]
Expand All @@ -15,6 +15,7 @@ rustc-hash = "2.0.0"
bio = "2.0.1"
regex = "1.10.6"
concat-string = "1.0.1"
itertools = "0.13.0"

[profile.release]
lto = 'thin'
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51 changes: 51 additions & 0 deletions data/output/classify/predict_data.csv
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252 changes: 252 additions & 0 deletions data/output/classify/results/dataframe.csv
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30 changes: 30 additions & 0 deletions data/output/classify/results/metrics.txt
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GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle.
Results from validation
Accuracy:0.9411764705882353
Metrics:
precision recall f1-score support

Alpha 1.00 1.00 1.00 11
Beta 0.77 1.00 0.87 10
Delta 1.00 0.70 0.82 10
Gamma 1.00 1.00 1.00 10
Omicron 1.00 1.00 1.00 10

accuracy 0.94 51
macro avg 0.95 0.94 0.94 51
weighted avg 0.95 0.94 0.94 51
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle.
Results from validation
Accuracy:0.8823529411764706
Metrics:
precision recall f1-score support

Alpha 1.00 1.00 1.00 11
Beta 0.62 1.00 0.77 10
Delta 1.00 0.40 0.57 10
Gamma 1.00 1.00 1.00 10
Omicron 1.00 1.00 1.00 10

accuracy 0.88 51
macro avg 0.93 0.88 0.87 51
weighted avg 0.93 0.88 0.87 51
Binary file added data/output/mutations/Alpha/Alpha_ExclusiveKmers.sav
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1 change: 1 addition & 0 deletions data/output/mutations/Alpha/Alpha_ExclusiveKmers.txt
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['CTGGTAATTT', 'GTTTTGTCCG', 'CCTGGTAATT', 'GGTTTTGTCC']
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