Rust: include entropy calc in Rust

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "gramep"
-version = "1.0.6"
+version = "1.0.7"
 edition = "2021"
 
 [lib]

README.md

@@ -16,7 +16,7 @@
 GRAMEP is accessible through a robust and intuitive Command-Line Interface (CLI). The primary command is `gramep`, with sub-commands for each action the application can perform.
 
 
-For detailed information, access the documentation.
+For detailed information, access the [documentation](https://gramep.readthedocs.io/).
 
 ## How to install
 

data/output/classify/results/metrics.txt

@@ -1,30 +1,30 @@
 GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle.
 Results from validation
-Accuracy:0.9411764705882353
+Accuracy:1.0
 Metrics:
               precision    recall  f1-score   support
 
        Alpha       1.00      1.00      1.00        11
-        Beta       0.77      1.00      0.87        10
-       Delta       1.00      0.70      0.82        10
+        Beta       1.00      1.00      1.00        10
+       Delta       1.00      1.00      1.00        10
        Gamma       1.00      1.00      1.00        10
      Omicron       1.00      1.00      1.00        10
 
-    accuracy                           0.94        51
-   macro avg       0.95      0.94      0.94        51
-weighted avg       0.95      0.94      0.94        51
+    accuracy                           1.00        51
+   macro avg       1.00      1.00      1.00        51
+weighted avg       1.00      1.00      1.00        51
 GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle.
 Results from validation
-Accuracy:0.8823529411764706
+Accuracy:1.0
 Metrics:
               precision    recall  f1-score   support
 
        Alpha       1.00      1.00      1.00        11
-        Beta       0.62      1.00      0.77        10
-       Delta       1.00      0.40      0.57        10
+        Beta       1.00      1.00      1.00        10
+       Delta       1.00      1.00      1.00        10
        Gamma       1.00      1.00      1.00        10
      Omicron       1.00      1.00      1.00        10
 
-    accuracy                           0.88        51
-   macro avg       0.93      0.88      0.87        51
-weighted avg       0.93      0.88      0.87        51
+    accuracy                           1.00        51
+   macro avg       1.00      1.00      1.00        51
+weighted avg       1.00      1.00      1.00        51

data/output/mutations/Alpha/Alpha_ExclusiveKmers.txt

@@ -1 +1 @@
-['CTGGTAATTT', 'GTTTTGTCCG', 'CCTGGTAATT', 'GGTTTTGTCC']
+['GACATTGATG', 'TTACAAGTTT', 'CTCAAGGTAT', 'CCATAAATTT', 'CTACACACAA', 'CCCACTTACA', 'ATCTCTGGGA', 'TCAGGGTGTT', 'ATGCTATCTC', 'TGCATCGATA', 'CATCTTATGG', 'AAATGTCTCT', 'CTTAACATCA', 'TTATTTTACA', 'TCTCTAAATG', 'AGACATTGAT', 'CACAACACAT', 'ACATTGATGA', 'ACTTTGTCTG', 'TTTGTCCGGG', 'TCTTATGGGT', 'AACTATTATT', 'TCATCGGCGG', 'TTATTCAAAC', 'AATGTTTGGT', 'CTGGTAATTT', 'CCTCATCTTA', 'GATAACACCT', 'CCTCAAGGTA', 'AAACCCTCAT', 'GCACGTCTTG', 'CAATTTGGTT', 'TACACACAAC', 'AAACTAAATG', 'GTTTTGTCCG', 'TTGAAGCTAA', 'AGCTATAAAA', 'ATGACACTAC', 'ATAACACCTC', 'TTAACATCAA', 'TTGATGACAC', 'ACACCTCAAG', 'ATGTCTCTAA', 'TGTCAAACCT', 'TCCTTGCACG', 'GTCTCTAAAT', 'ACACAACACA', 'TATCAGGGTG', 'CTATCTCTGG', 'AACCTGGTAA', 'CCATGCTATC', 'CTTATGGTGT', 'TGTTCCCACT', 'GGTGTTAACT', 'CCCTCATCTT', 'CATCGGCGGG', 'TCAAACCTGG', 'GTGCATCGAT', 'CATAAATTTT', 'GATAACTTTT', 'CAGTGCATCG', 'TATGGTGTTG', 'AGTTTGAAGC', 'CCACTTACAA', 'CATGCTATCT', 'TTGTCCGGGT', 'GCTATCTCTG', 'ACTAGTTTGA', 'TACTTAACAT', 'TGTTTACCAC', 'GTTCTTTTTA', 'TCTAGGTTTT', 'TTTTACCCTC', 'GCTGATAACT', 'CAAAATGTTT', 'CCACTTATGG', 'TATCTCTGGG', 'CTTTGTCTGA', 'GTGAAGCTGA', 'CTAGGTTTTG', 'ACCTGGTAAT', 'CTTGCACGTC', 'TTCCCACTTA', 'TAGGTTTTGT', 'CTGATAACTT', 'TAAATTTTAC', 'ATCTTATGGG', 'TTCAGTGCAT', 'TTGGTAAAGG', 'AAATGGACCC', 'AATTCTCATC', 'TATCCTTGCA', 'ATCGGCGGGC', 'TTATGGTGTT', 'CTTATTTTAC', 'TGTCTCTAAA', 'CTTTTTACCC', 'AGGAGCTATA', 'ATGTTTGGTA', 'GGGTGTTAAC', 'CATACCCATA', 'ACTATTATTC', 'AGACAACTAT', 'CTCTAAATGG', 'ATTGATGACA', 'TTTTACAGAG', 'GACAACTATT', 'GTTCCCACTT', 'CTTACAAGTT', 'TAATTCTCAT', 'CTCATCTTAT', 'TATTTTACAG', 'ATAACTTTTG', 'TACAATTTGG', 'TTTACCCTCC', 'TAAAATCAGC', 'CATGTACTTA', 'TAACATCAAC', 'TAACACCTCA', 'ATGTACTTAA', 'ATAAATTTTA', 'TAGTTTGAAG', 'CCCATAAATT', 'ACTTAACATC', 'GGTTTTGTCC', 'CCCACTTATG', 'ACCTCAAGGT', 'GGGTGTTTAC', 'TCTAAATGGA', 'TCTCATCGGC', 'TGCACGTCTT', 'TAAATGGACC', 'CACTTTGTCT', 'AACTAAATGT', 'AAATGTTTGG', 'CATTGATGAC', 'GTTTACCACA', 'ATCCTTGCAC', 'GCTATAAAAT', 'TTTACAGAGC', 'CTCATCGGCG', 'GTTTGGTAAA', 'ACTACACACA', 'TTACCCTCCA', 'GGAGCTATAA', 'TTTTGTCCGG', 'ATATTACAAT', 'CACCTCAAGG', 'TACTACACAC', 'TGAAGCTAAA', 'CTAATTCTCA', 'CTAGTTTGAA', 'ATTCAGTGCA', 'TCTTATTTTA', 'ATTATTCAAA', 'AACCCTCATC', 'TAGGAGCTAT', 'ATTACAATTT', 'CACACAACAC', 'TTCTTATTTT', 'TTCTCATCGG', 'TTACTACACA', 'AGGTTTTGTC', 'TTTTTACCCT', 'AAGCTGATAA', 'TGCTATCTCT', 'CCATTCAGTG', 'AATGTCTCTA', 'AACCCACTTA', 'TTACAATTTG', 'CAACCCACTT', 'TATTACAATT', 'TAAATGTCTC', 'AGTGCATCGA', 'ATTACTACAC', 'CAACTATTAT', 'TTTATCAGGG', 'CCATACCCAT', 'AGGGTGTTAA', 'TGTACTTAAC', 'ACTTACAAGT', 'GATGACACTA', 'GAGACATTGA', 'ATATCCTTGC', 'ACTAAATGTC', 'ACCCATAAAT', 'TACCCATAAA', 'ACCCTCATCT', 'ATCAGGGTGT', 'AAATATTACA', 'TATAAAATCA', 'ATTCTCATCG', 'ACCCACTTAT', 'TAAATATTAC', 'GTCAAACCTG', 'CATTCAGTGC', 'TGTCCGGGTG', 'TCCCACTTAC', 'CTAAATGGAC', 'CCTTGCACGT', 'GATATCCTTG', 'TGTTTGGTAA', 'ATACCCATAA', 'CTAAATGTCT', 'TCATGTACTT', 'CAGGGTGTTA', 'CCTGGTAATT', 'ACACACAACA', 'TTTGAAGCTA', 'TTATCAGGGT', 'AACACCTCAA', 'AAACCTGGTA', 'TGAAGCTGAT', 'TTTGTCTGAA', 'TGATAACTTT', 'ACTTATGGTG', 'TGATAACACC', 'GTTTGAAGCT', 'TCAGTGCATC', 'CACTTATGGT', 'ATAAAATCAG', 'TTTGGTAAAG', 'TTGCACGTCT', 'ATTTTACAGA', 'GAGCTATAAA', 'ACAATTTGGT', 'GAAGCTGATA', 'GCATCGATAT', 'CTATAAAATC', 'CAAACTAAAT', 'CACTTACAAG', 'TCTTTTTACC', 'CAAACCTGGT']