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Adds M2M Consultation Diagnosis model (#1690)
* Add ConsultationDiagnosis M2M model and migrations * ABDM: Update FHIR utils with ConsultationDiagnoses M2M relation * Update HCX: Update diagnoses in make_claim with M2M relation * API: Adds serializers, viewsets and api route * Unlock `unconfirmed` and `differential` verification status * uncomplicate things.... * minor fixes * more bug fixes.... :/ * gracefully handle invalid icd11 objects * fix `load_icd11_diagnoses_data` re-run issue * Update Discharge Summary * Annotate CSV export by diagoses * fix create_disgnoses not working * minor fix * fix existing tests * add tests * squash migrations * improve coverage by a tiny factor * Add authz, optimizations to model, proper validation message * fix validation * fix authz * fix typo * fix patient notes * Add chapter information to ICD serialization (#1696) * HCX: update diagnoses in make claim * avoid redundant permission checks * fix errors * make code pretty * Apply suggestions from code review Co-authored-by: Aakash Singh <mail@singhaakash.dev> --------- Co-authored-by: Aakash Singh <mail@singhaakash.dev>
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care/facility/api/serializers/consultation_diagnosis.py
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,127 @@ | ||
| from typing import Any | ||
|
|
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| from rest_framework import serializers | ||
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| from care.facility.models import ( | ||
| INACTIVE_CONDITION_VERIFICATION_STATUSES, | ||
| ConsultationDiagnosis, | ||
| ) | ||
| from care.facility.models.icd11_diagnosis import ICD11Diagnosis | ||
| from care.facility.static_data.icd11 import get_icd11_diagnosis_object_by_id | ||
| from care.users.api.serializers.user import UserBaseMinimumSerializer | ||
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| class ConsultationCreateDiagnosisSerializer(serializers.ModelSerializer): | ||
| def validate_verification_status(self, value): | ||
| if value in INACTIVE_CONDITION_VERIFICATION_STATUSES: | ||
| raise serializers.ValidationError("Verification status not allowed") | ||
| return value | ||
|
|
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| class Meta: | ||
| model = ConsultationDiagnosis | ||
| fields = ("diagnosis", "verification_status", "is_principal") | ||
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| class ConsultationDiagnosisSerializer(serializers.ModelSerializer): | ||
| id = serializers.UUIDField(source="external_id", read_only=True) | ||
| diagnosis = serializers.PrimaryKeyRelatedField( | ||
| queryset=ICD11Diagnosis.objects.all(), required=True, allow_null=False | ||
| ) | ||
| diagnosis_object = serializers.SerializerMethodField() | ||
| created_by = UserBaseMinimumSerializer(read_only=True) | ||
|
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| def get_diagnosis_object(self, obj): | ||
| return get_icd11_diagnosis_object_by_id(obj.diagnosis_id, as_dict=True) | ||
|
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| class Meta: | ||
| model = ConsultationDiagnosis | ||
| exclude = ( | ||
| "consultation", | ||
| "external_id", | ||
| "deleted", | ||
| ) | ||
| read_only_fields = ( | ||
| "created_by", | ||
| "created_date", | ||
| "modified_date", | ||
| "is_migrated", | ||
| ) | ||
|
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| def get_consultation_external_id(self): | ||
| return self.context["request"].parser_context["kwargs"][ | ||
| "consultation_external_id" | ||
| ] | ||
|
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| def validate_diagnosis(self, value): | ||
| if self.instance and value != self.instance.diagnosis: | ||
| raise serializers.ValidationError("Diagnosis cannot be changed") | ||
|
|
||
| if ( | ||
| not self.instance | ||
| and ConsultationDiagnosis.objects.filter( | ||
| consultation__external_id=self.get_consultation_external_id(), | ||
| diagnosis=value, | ||
| ).exists() | ||
| ): | ||
| raise serializers.ValidationError( | ||
| "Diagnosis already exists for consultation" | ||
| ) | ||
|
|
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| return value | ||
|
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| def validate_verification_status(self, value): | ||
| if not self.instance and value in INACTIVE_CONDITION_VERIFICATION_STATUSES: | ||
| raise serializers.ValidationError("Verification status not allowed") | ||
| return value | ||
|
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| def validate_is_principal(self, value): | ||
| if not value: | ||
| return value | ||
|
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| qs = ConsultationDiagnosis.objects.filter( | ||
| consultation__external_id=self.get_consultation_external_id(), | ||
| is_principal=True, | ||
| ) | ||
|
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| if self.instance: | ||
| qs = qs.exclude(id=self.instance.id) | ||
|
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| if qs.exists(): | ||
| raise serializers.ValidationError( | ||
| "Consultation already has a principal diagnosis. Unset the existing principal diagnosis first." | ||
| ) | ||
|
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| return value | ||
|
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| def update(self, instance, validated_data): | ||
| if ( | ||
| "verification_status" in validated_data | ||
| and validated_data["verification_status"] | ||
| in INACTIVE_CONDITION_VERIFICATION_STATUSES | ||
| ): | ||
| instance.is_principal = False | ||
| return super().update(instance, validated_data) | ||
|
|
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| def validate(self, attrs: Any) -> Any: | ||
| validated = super().validate(attrs) | ||
|
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| if ( | ||
| "verification_status" in validated | ||
| and validated["verification_status"] | ||
| in INACTIVE_CONDITION_VERIFICATION_STATUSES | ||
| ): | ||
| validated["is_principal"] = False | ||
|
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| if "is_principal" in validated and validated["is_principal"]: | ||
| verification_status = validated.get( | ||
| "verification_status", | ||
| self.instance.verification_status if self.instance else None, | ||
| ) | ||
| if verification_status in INACTIVE_CONDITION_VERIFICATION_STATUSES: | ||
| raise serializers.ValidationError( | ||
| { | ||
| "is_principal": "Refuted/Entered in error diagnoses cannot be marked as Principal Diagnosis" | ||
| } | ||
| ) | ||
|
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| return validated |
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