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A few modules for a simple biological neuron simulation.
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nishbo/simsimpy
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SimSimPy is a collection of useful functions for simple simulation written in Python. It has a simple architecture, easy logic and clear classes. It should not be used for hardcore calculations and experiments. Package is intended to use for education in computational neuroscience, simple experiments and testing of architecture performance. Depends on: Python35 Installation: 1. Download repository. 2. Open package directory (the one that contains setup.py) in terminal. 3. Type 'python setup.py install'. Package simsimpy contains following modules: 1. random Contains a few functions expanding random number generator capabilities. 2. other A few useful functions. 3. intstep Integration step module. 4. optimzie Contains a series of optimization functions. Requires scipy. Archive containes deprecated and not supported (although completely working) functions: 1. neuron Contains models of neurons. Now leaky integrate-and-fire and Hodgkin-Huxley models are included. 2. node Contains Node and SimpleSynapse classes. Defines a basic node of network. 3. synapse Contains various models of synaptic plasticity. Short-term Tsodyks-Markram and long-term STDP are included. For more information use help. For example of usage see example.py script.
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