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ENH: Default to 4mm re-zoom for b-spline approximation #314

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merged 3 commits into from
Dec 7, 2022

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@effigies effigies commented Dec 7, 2022

Downsample fieldmap images to 4mm isotropic before approximating b-splines.

The 1.95mm suggestion was a cut-off for downsampling by a factor of 2 so that we did not go worse than 4mm. (The 0.05 margin was to avoid something like 1.99x1.99x2.01 from becoming 3.98x3.98x2.01.) Given that instead we're resampling to a maximum resolution, let's just set it

Running at 2mm, I'm still finding multi-hour approximations. 4mm seems reasonable, as that's still a 4:1 voxels-to-knots ratio for the high-frequency components. I haven't tried 3mm.

@effigies effigies added this to the 2.2.0 milestone Dec 7, 2022
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effigies commented Dec 7, 2022

This was discussed in meeting. Merging.

@effigies effigies merged commit 7057072 into nipreps:master Dec 7, 2022
@effigies effigies deleted the fix/target_zooms branch December 7, 2022 17:57
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