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ENH: Allow bids filtering during get() calls. #292

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merged 7 commits into from
Nov 28, 2022

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mgxd
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@mgxd mgxd commented Oct 20, 2022

This is to bring SDCFlow's file filtering more in-line with approaches taken in other nipreps. To avoid potential collisions during get() parameter assigment, base / additional values are first merged into a dictionary, and then passed in as keyword arguments

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mgxd commented Oct 20, 2022

blocked by #293

mgxd added 7 commits October 21, 2022 09:43
This is to bring SDCFlow's file filtering more in-line with approaches taken in other nipreps.
To avoid potential collisions during `get()` parameter assigment, base / additional values are first merged
into a dictionary, and then passed in as keyword arguments
@mgxd mgxd force-pushed the enh/wrangler-filters branch from b909a8d to 30f5ae2 Compare October 21, 2022 13:44
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codecov-commenter commented Oct 21, 2022

Codecov Report

Base: 85.38% // Head: 87.22% // Increases project coverage by +1.83% 🎉

Coverage data is based on head (30f5ae2) compared to base (83b064e).
Patch coverage: 86.66% of modified lines in pull request are covered.

Additional details and impacted files
@@            Coverage Diff             @@
##           master     #292      +/-   ##
==========================================
+ Coverage   85.38%   87.22%   +1.83%     
==========================================
  Files          24       25       +1     
  Lines        1930     1988      +58     
  Branches      221      299      +78     
==========================================
+ Hits         1648     1734      +86     
+ Misses        246      220      -26     
+ Partials       36       34       -2     
Flag Coverage Δ
travis 85.33% <86.66%> (-0.06%) ⬇️
unittests 87.12% <86.66%> (?)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
sdcflows/utils/wrangler.py 95.41% <86.66%> (-1.68%) ⬇️
sdcflows/conftest.py 0.00% <0.00%> (ø)
sdcflows/workflows/outputs.py 93.54% <0.00%> (+1.61%) ⬆️
sdcflows/interfaces/reportlets.py 89.83% <0.00%> (+1.69%) ⬆️
sdcflows/interfaces/bspline.py 88.00% <0.00%> (+5.33%) ⬆️
sdcflows/interfaces/fmap.py 87.35% <0.00%> (+14.94%) ⬆️
sdcflows/workflows/fit/syn.py 69.82% <0.00%> (+21.30%) ⬆️
sdcflows/utils/phasemanip.py 94.02% <0.00%> (+28.35%) ⬆️

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@mgxd mgxd marked this pull request as ready for review October 21, 2022 14:56
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It looks like we've had a bunch of significant changes since 2.1.1, so master will probably be a 2.2.0 release. Do you want to target 2.1.2? I've just pushed a maint/2.1.x branch.

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Can backport if needed.

@effigies effigies merged commit 07ee004 into nipreps:master Nov 28, 2022
@mgxd mgxd deleted the enh/wrangler-filters branch December 5, 2022 18:22
@effigies effigies added this to the 2.2.0 milestone Dec 6, 2022
effigies pushed a commit to effigies/sdcflows that referenced this pull request Dec 7, 2022
This is to bring SDCFlow's file filtering more in-line with approaches taken in other nipreps.
To avoid potential collisions during `get()` parameter assigment, base / additional values are first merged
into a dictionary, and then passed in as keyword arguments

Backport niprepsgh-292
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