ENH: Calculate robust average of EPI inputs to TOPUP workflow #280
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This PR uses BIDS' interpretation of a run, and disables the nested flattening of inputs to topup. Instead 4D runs are reduced to 3D references with
RobustAverage.Effectively, it reduces the runtime of the data I'm testing on (6 runs x 10 timepoints) from +3h down to 20 minutes.
Resolves: #279.