ENH: Allow --use-syn-sdc
to take a "warn" option to avoid exiting when PE dir is unavailable
#2680
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The main use case here is when writing a script to run fMRIPrep on heterogeneous datasets. This avoids having to pre-check each dataset/subject for whether
PhaseEncodingDirection
is available; you just run it if you can.Also simplifies the (probably vanishingly rare) case where
PhaseEncodingDirection
may be available for some tasks/runs within a subject but not others.The old behaviors are preserved, so this is bug-fix safe.
--use-syn-sdc
and--use-syn-sdc error
are synonyms.--use-syn-sdc warn
is the new feature.Happy to consider alternative approaches, but I think this is useful functionality.