Add option to control t2smap fittype #3029
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I think it would be okay to add a parameter. |
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Sounds good. I can open a PR for that. |
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Closes #3029. ## Changes proposed in this pull request - Add a new command line parameter, `--me-t2s-fit-method`, to control how T2* and S0 will be estimated with tedana. The default, "curvefit", is slower and more memory intensive, which has led to out-of-memory errors for some users. The new option, "loglin", shouldn't result in the same memory issues, but it also may produce less accurate estimates. ## Documentation that should be reviewed I added a couple of sentences on the new parameter to the "T2*-driven echo combination" section of `workflows.rst`.
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What would you like to see added in fMRIPrep?
Users have reported memory issues with the nonlinear T2*/S0 fitting setting (e.g., #2935 and #2827), so it might be worthwhile to give them control over the setting. I don't think it merits a command-line parameter, but is it perhaps something that could be controlled via the config file?
Do you have any interest in helping implement the feature?
Yes
Additional information / screenshots
Alternatively, I could change the fittype from nonlinear to the less memory-intensive, but potentially less accurate,
loglinoption.The text was updated successfully, but these errors were encountered: