Update PortalStudy.json

[cconrad8]

No description provided.

[cconrad8]

This is related to this PR as well - nf-osi/jobs#90 and this ticket
https://github.com/orgs/nf-osi/projects/3/views/1?pane=issue&itemId=61481556&issue=nf-osi%7Cnf-metadata-dictionary%7C459

@nf-osi/dcc-team

I think the main issue we need to solve is having a discrepancy between grant end and embargo dates/ closeout of projects in Synpase tables vs. Github - and this could be a first step.

[github-actions]

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2024-10-22 15:54 UTC

[anngvu]

@cconrad8 Thanks, we can merge this first. Note: Remember to update the YAML directly since the JSON is just like the JSON-LD (generated from the YAML).

[cconrad8]

oops! thank you for the reminder! @anngvu

[github-actions]

Test Suite Report 24.7.2

Template Generation

template	result	link
ClinicalAssayTemplate	😄	template link
EpigeneticsAssayTemplate	😄	template link
FlowCytometryTemplate	😄	template link
GenomicsAssayTemplate	😄	template link
GenomicsAssayTemplateExtended	😄	template link
HumanCohortTemplate	❌
ImagingAssayTemplate	😄	template link
LightScatteringAssayTemplate	😄	template link
MethylationArrayTemplate	😄	template link
MRIAssayTemplate	😄	template link
PharmacokineticsAssayTemplate	😄	template link
PlateBasedReporterAssayTemplate	😄	template link
ProcessedAlignedReadsTemplate	😄	template link
ProcessedExpressionTemplate	😄	template link
ProcessedVariantCallsTemplate	😄	template link
ProteomicsAssayTemplate	😄	template link
ProtocolTemplate	😄	template link
RNASeqTemplate	😄	template link
ScRNASeqTemplate	😄	template link
UpdateMilestoneReport	😄	template link
WESTemplate	😄	template link
WGSTemplate	😄	template link

Manifest Validation

manifest	result	expectation
GenomicsAssayTemplate_0.csv	😄	Lists can be blank if attr not required using ‘list like’ rule
GenomicsAssayTemplate_1.csv	😄	Mixing blanks and regular list values works
GenomicsAssayTemplate_2.csv	😄	Conditional validation for attributes is currently not supported
GenomicsAssayTemplate_control.csv	😄	There should be no issue with this template.
ScRNASeqTemplate_0.csv	😄	Single list val works by using ‘list like’ rule
ScRNASeqTemplate_1.csv	😄	Fail because of missing data in required field libraryStrand

Manifest Submission

manifest	pass
GenomicsAssayTemplate_0.csv	😄
GenomicsAssayTemplate_1.csv	😄
GenomicsAssayTemplate_2.csv	😄
GenomicsAssayTemplate_control.csv	😄
ScRNASeqTemplate_0.csv	❌