Portal dataset access

[anngvu]

We don't really use accessType on datasets yet, but this should help with finalizing semantics so that correct code** can be implemented. This update also conveys that datasets don't have to be released (with or without restrictions) to be in the portal listing.

**to derive status from files at the time of dataset new-versioning.

Also see explanation here for the revision: https://sagebionetworks.slack.com/archives/C0AFCTGEQ/p1721857413285619?thread_ts=1721840221.098519&cid=C0AFCTGEQ

These definitions definitely need to go into the Confluence docs somewhere...

[github-actions]

PR Preview Action v1.4.7
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2024-07-30 17:12 UTC

[github-actions]

Test Suite Report 24.7.1

Template Generation

template	result	link
ClinicalAssayTemplate	😄	template link
EpigeneticsAssayTemplate	😄	template link
FlowCytometryTemplate	😄	template link
GenomicsAssayTemplate	😄	template link
GenomicsAssayTemplateExtended	😄	template link
HumanCohortTemplate	😄	template link
ImagingAssayTemplate	😄	template link
LightScatteringAssayTemplate	😄	template link
MethylationArrayTemplate	😄	template link
MRIAssayTemplate	😄	template link
PharmacokineticsAssayTemplate	😄	template link
PlateBasedReporterAssayTemplate	😄	template link
ProcessedAlignedReadsTemplate	😄	template link
ProcessedExpressionTemplate	😄	template link
ProcessedVariantCallsTemplate	😄	template link
ProteomicsAssayTemplate	😄	template link
ProtocolTemplate	😄	template link
RNASeqTemplate	😄	template link
ScRNASeqTemplate	😄	template link
UpdateMilestoneReport	😄	template link
WESTemplate	😄	template link
WGSTemplate	😄	template link

Manifest Validation

manifest	result	expectation
GenomicsAssayTemplate_0.csv	😄	Lists can be blank if attr not required using ‘list like’ rule
GenomicsAssayTemplate_1.csv	😄	Mixing blanks and regular list values works
GenomicsAssayTemplate_2.csv	😄	Conditional validation for attributes is currently not supported
GenomicsAssayTemplate_control.csv	😄	There should be no issue with this template.
ScRNASeqTemplate_0.csv	😄	Single list val works by using ‘list like’ rule
ScRNASeqTemplate_1.csv	😄	Fail because of missing data in required field libraryStrand

Manifest Submission

manifest	pass
GenomicsAssayTemplate_0.csv	😄
GenomicsAssayTemplate_1.csv	😄
GenomicsAssayTemplate_2.csv	😄
GenomicsAssayTemplate_control.csv	😄
ScRNASeqTemplate_0.csv	😄